Chapter 5: Origin and Evolution of Life

In December 1938, a museum curator named Marjorie Courtenay-Latimer went down to the docks at East London, South Africa, to look through a fishing trawler’s catch. Among the ordinary fish she saw something strange: a heavy, steel-blue fish about a metre and a half long, with thick scales and — most puzzling of all — fins that sat on stubby, fleshy, limb-like stalks. They did not look like fins. They looked like the beginnings of legs.

She could not identify it, so she sketched it and sent the drawing to a chemistry lecturer and fish expert, J. L. B. Smith. When he saw the sketch, he was astonished. This was a coelacanth — a lobe-finned fish known only from fossils, and believed to have died out long before the age of the dinosaurs ended. A creature that existed only in rock had just been pulled out of the sea, alive.

The coelacanth mattered because those fleshy fins tell a story. Fins like these are thought to be the kind of structure from which the limbs of the first land vertebrates arose. A living animal was carrying, in its own body, a clue to how life had changed over hundreds of millions of years.

This chapter is about that change — how life may have begun on a lifeless Earth, how it slowly diversified into millions of forms, and how we can read that history in fossils, bones, and genes.

Diagram

Fig. 5.0 – A living coelacanth swimming near the sea floor, with its lobed, limb-like paired fins clearly visible and labelled, and a small inset of a fossil coelacanth in rock for comparison

NoteCuriosity Corner

Q1. If every living thing today comes from another living thing, how did the very first living thing appear? Q2. Can non-living chemicals really combine on their own to form the building blocks of life — and has anyone ever tested this in a laboratory? Q3. How do scientists know that a fish like the coelacanth was “extinct for millions of years”? What tells us the age of life on Earth? Q4. Why do the flipper of a whale, the wing of a bat and your own arm contain exactly the same set of bones? Q5. Why do some mosquitoes survive an insecticide spray that kills all the others — and what does this have to do with the origin of new species?

By the end of this chapter, you will be able to answer each of these questions for yourself.

5.1 Origin of Life (Protobiogenesis)

What Makes Matter “Living”?

Before we ask how life began, we must be clear about what we mean by “living”. Living matter is not simply matter that moves. It shows a definite set of attributes that non-living matter does not.

Living matter responds to changes around it (responsiveness), it grows, it carries out metabolism — the sum of all chemical reactions taking place inside the body. It also carries out energy transformations, changing energy from one form to another to run these reactions, and it reproduces, making more of its own kind.

Notice that these are not random properties. Each of them is needed for a body to stay organised and to continue existing. A living system constantly spends energy to keep itself in order, and it copies itself before it wears out. Any explanation for the origin of life must therefore explain how a bundle of chemicals first came to do all of these things together.

attributes of the living (Zoom in: these attributes ultimately arise from molecules — proteins, nucleic acids, lipids — reacting in an organised way. Zoom out: the same attributes are shown by every cell, every organism, and every population that evolves.)

An Unanswered Question

The origin of life has remained an enigma — a deep puzzle — for thinkers of every age. Even today, despite great progress in biochemistry, astrobiology, geography and molecular biology, scientists have not been able to establish the complete truth of how life first appeared.

Because the event happened roughly four billion years ago and left no direct witness, various theories and hypotheses have been proposed to find the probable answer. Some of these are religious, some speculative, and some testable by experiment. Only the testable ones are of scientific value. The main lines of thought are compared in FC 5.1.

Flowchart

FC 5.1 – Theories of the origin of life: Question “How did life begin?” → branch 1: Theory of Special Creation (created by a supernatural power; no scientific proof) → branch 2: Cosmozoic Theory / Panspermia (life arrived from space as spores) → branch 3: Theory of Spontaneous Generation / Abiogenesis (life arose suddenly from non-living matter; disproved by Pasteur) → branch 4: Theory of Biogenesis (life comes only from pre-existing life; explains continuity, not the first life) → leads to → Chemical Evolution (Section 5.2)

a. Theory of Special Creation

This is the oldest of all the theories. It is based on religious belief and has no scientific proof behind it. According to this theory, all living organisms were created by a super-natural power.

Because the theory offers nothing that can be tested, measured, or disproved by observation, it lies outside the scope of science. Science does not reject it as a belief; it simply cannot examine it using experiments.

Q. Why do scientists say the theory of special creation is “not scientific”?

A. Because there is no way to design an observation or experiment whose result could show it to be wrong. A scientific explanation must be testable and open to being disproved.

b. Cosmozoic Theory (Theory of Panspermia)

This theory advocates that life did not originate on the planet Earth at all. Instead, it may have descended to the earth from other planets in the form of spores or micro-organisms. These hypothetical travelling life-forms are called cosmozoa or panspermia.

The idea is not entirely far-fetched. Recently, NASA has reported fossils of bacteria-like organisms on a piece of Martian rock recovered from Antarctica — a meteorite that reached the earth from Mars.

Yet the theory has a fatal weakness. Even if life did arrive from another planet, this theory could not explain the origin of life on those other planets. It simply shifts the problem elsewhere instead of solving it, and hence it is not accepted.

c. Theory of Spontaneous Generation (Abiogenesis)

According to this theory, life originated from non-living (inanimate) material spontaneously. In other words, living organisms were thought to arise on their own, suddenly and repeatedly, out of mud, decaying meat, or grain.

Such beliefs were common for centuries. People saw maggots appear on rotting meat and concluded that the meat itself had produced them. This theory was disproved by Louis Pasteur.

NoteDefinition

(Abiogenesis — the belief that living organisms arise spontaneously, again and again, from non-living matter.)

In the seventeenth century, the Italian physician Francesco Redi tested this belief with a simple, elegant experiment. He placed meat in a set of jars: some left open, some sealed, and some covered only with gauze. Flies could reach the meat in the open jars, and maggots appeared there. In the sealed jars, no flies could reach the meat and no maggots appeared. In the gauze-covered jars, flies laid eggs on the gauze itself, and maggots appeared on the gauze — not on the meat. The maggots, then, came from the eggs of flies, not from the meat. Redi’s experiment is shown in Fig. 5.20.

Diagram

Fig. 5.20 – Redi’s experiment: three jars of meat side by side — open jar (flies enter, maggots appear), sealed jar (no flies, no maggots), gauze-covered jar (flies on gauze, maggots on gauze only); label flies, maggots and “no maggots”

Redi’s work weakened the theory, but supporters of spontaneous generation shifted their argument to micro-organisms: perhaps large animals do not appear on their own, they said, but microbes in a broth surely do.

Louis Pasteur settled the question in the nineteenth century with his swan-necked flask experiment, shown in Fig. 5.21. He boiled a nutrient broth in a flask whose neck was drawn out into a long S-shaped curve. Air could still enter freely, but dust and micro-organisms in the air settled in the bend of the neck and never reached the broth. The broth remained free of micro-organisms indefinitely. When the curved neck was broken off, micro-organisms from the air reached the broth at once, and it teemed with growth. Life had not appeared out of nothing — it had walked in from outside.

Diagram

Fig. 5.21 – Pasteur’s experiment: swan-necked flask with broth being boiled; broth remains clear and free of micro-organisms; second flask with the curved neck removed showing micro-organisms growing in the broth

Abiogenesis vs Biogenesis (Abiogenesis says life keeps arising from non-living matter here and now. Biogenesis says life arises only from pre-existing life. Pasteur’s flask disproved abiogenesis and established biogenesis.)

d. Theory of Biogenesis

According to this theory, living organisms are always produced from pre-existing living forms, by the process called reproduction. A bacterium comes from a bacterium; a mango tree comes from a mango seed; a child comes from parents.

NotePrinciple / Law

(Theory of Biogenesis — living organisms arise only from pre-existing living organisms, through reproduction.)

This theory is strongly supported by everyday observation and by Pasteur’s experiment. But look closely at what it can and cannot do. Biogenesis explains the continuity of life — how life keeps going once it exists. It cannot explain the origin of the first life on earth, because there were no pre-existing living forms to reproduce from.

That gap is exactly why a further explanation was needed. If the first cell could not have been born from a parent, and could not have appeared magically from mud, then it must have been assembled slowly, step by step, from simple chemicals — over an enormous span of time. This idea is taken up in the next section.

Q. Pasteur proved that life comes only from life. Does that not disprove the very idea that life once arose from chemicals?

A. No. Pasteur showed that life does not arise spontaneously in a few days, in a nutrient broth, on the present-day earth — which is rich in oxygen and full of micro-organisms that would destroy any fragile new molecule. The early earth had no free oxygen, no living competitors, and hundreds of millions of years. Those are entirely different conditions.

Pasteur’s finding is not just history — it is the reason your food stays safe. Sterilisation of surgical instruments, pasteurisation of milk, canning of food, and the sealed packaging of tetra-pack juice all rest on one idea: kill the micro-organisms already present, then keep new ones out. If abiogenesis were true, sealing a packet would be pointless, because life would simply appear inside it.

5.2 Chemical Evolution of Life (Self Assembly Theory of Origin of Life)

Section 5.1 left us with a gap. Life cannot appear from nothing, and yet the very first living form had no parent. The only remaining possibility is that it was built — not in one leap, but by chemistry, over an immense stretch of time.

According to this theory, life originated on earth by the combination of several chemicals through constant chemical reactions carried out over a long period of time. Because the molecules gradually joined together and organised themselves without any outside designer, the theory is also called the self assembly theory of origin of life, or the biochemical origin of life.

The theory was first formulated by Haeckel. It was later developed in detail by the Russian scientist Alexander I. Oparin (1924) and the British biologist J. B. S. Haldane (1929). Working independently, both arrived at a strikingly similar picture of the early earth. The process of chemical evolution can be divided into the following steps, summarised in FC 5.2.

Flowchart

FC 5.2 – Steps of chemical evolution: Origin of earth and primitive reducing atmosphere → formation of \(CH_4\), \(NH_3\), \(H_2O\), \(H_2S\) → formation of simple organic molecules (monosaccharides, amino acids, purines, pyrimidines, fatty acids, glycerol) in the “hot dilute soup” → polymerisation into complex organic molecules (polysaccharides, fats, proteins, nucleosides, nucleotides) → formation of nucleic acids (RNA, DNA) with self-replicating ability → formation of protobionts (coacervates, microspheres) → eobionts/protocell → first cell (anaerobic, heterotrophic)

a. Origin of Earth and Primitive Atmosphere

To understand how life began, we must first understand the stage on which it began. The origin of the universe was explained by the Big-Bang theory of Georges Lemaitre (1931). According to this theory, the universe originated about 20 billion years ago by a single huge titanic explosion.

As the universe expanded, the temperature decreased, and various galaxies of solid objects were formed. The Milky Way is one such galaxy, and our solar system is one small part of it. The earth is one of the planets of the solar system, and it originated about 4.6 billion years ago.

When it was formed, the earth was a rotating cloud of hot gases and cosmic dust called a nebula. As this mass condensed and cooled, it separated into layers — a process called stratification. Heavier elements like nickel and iron sank to the core, while lighter ones such as helium, hydrogen, nitrogen, oxygen and carbon remained on the surface. These lighter elements formed the atmosphere of the earth.

This point is crucial. The primitive atmosphere of the earth was quite different from the present one: it was of a reducing type, devoid of free oxygen. A reducing atmosphere is one rich in hydrogen and hydrogen-containing gases, in which molecules tend to gain electrons rather than lose them. Without free oxygen, delicate organic molecules could form and survive instead of being burnt up.

Reducing atmosphere vs Oxidising atmosphere (The primitive atmosphere was reducing — hydrogen-rich, no free oxygen — so organic molecules could accumulate. Today’s atmosphere is oxidising, rich in \(O_2\), which would break such molecules down. Life could begin only under the first condition, but most life today depends on the second.)

b. Formation of Ammonia, Water and Methane

The primitive atmosphere was very hot. As it slowly cooled, the lighter elements began to react with one another, because at lower temperatures atoms can hold on to the bonds they form instead of being knocked apart.

The early atmosphere was rich in hydrogen, carbon, nitrogen and sulphur. Of these, hydrogen was the most active, and so it reacted with the other elements to form the first chemicals on earth: methane, ammonia, water and hydrogen sulphide — \(CH_4\), \(NH_3\), \(H_2O\) and \(H_2S\).

Q. Why did hydrogen combine with almost everything on the early earth?

A. Hydrogen was both the most abundant and the most chemically active element present. With no free oxygen to compete with, hydrogen took up carbon, nitrogen and sulphur, producing methane, ammonia and hydrogen sulphide respectively.

c. Formation of Simple Organic Molecules

As the temperature of the earth decreased further, steam condensed into water. This resulted in heavy rainfall, which cooled the earth still more. The rain water got accumulated on the land to form rivers, streams, lakes, seas and oceans.

The atmosphere at that time did not contain an ozone layer. Today, ozone in the upper atmosphere absorbs most of the sun’s ultra-violet radiation. Without it, ultra-violet radiation reached the surface of the earth directly, and it carried enormous energy.

Under the influence of the available energy sources — ultra-violet rays, other radiations, lightning and volcanic activity — the early molecules of hydrocarbons, ammonia, methane and water underwent reactions such as condensation, polymerisation, oxidation and reduction. Energy is essential here, because building a larger molecule from smaller ones does not happen on its own; it must be driven.

These reactions resulted in the formation of simple molecules like monosaccharides, amino acids, purines, pyrimidines, fatty acids and glycerol. You will recognise these at once: they are the very building blocks from which carbohydrates, proteins, nucleic acids and fats are made in living bodies today.

All these simple organic molecules accumulated at the bottom of water bodies. Haldane described this accumulation as the “hot dilute soup” or “primitive broth”.

Why did the soup not simply decay away? Because there was no free oxygen to oxidise these molecules, and no enzymes to break them down — the reactions were taking place in a non-enzymatic, reducing atmosphere. So instead of being destroyed as fast as they formed, the organic molecules piled up over millions of years, growing steadily more concentrated.

the primitive broth (No free oxygen and no enzymes → newly formed organic molecules were not degraded → molecules accumulated in water bodies over millions of years → a dense chemical mixture in which further reactions between them became likely.)

Q2. Can non-living chemicals really combine on their own to form the building blocks of life — and has anyone ever tested this in a laboratory?

A. Yes. On the early earth, simple gases such as methane, ammonia and water vapour, driven by ultra-violet radiation, lightning and volcanic heat, reacted to form amino acids, sugars and nitrogenous bases. This was not merely argued — it was tested, as you will see in Urey and Miller’s spark-discharge experiment described later in this section.

d. Formation of Complex Organic Molecules

The primitive broth was neutral and free from oxygen — a chemically gentle environment in which fragile long chains could survive. In it, polymerisation took place: simple organic molecules aggregated and joined to form new, larger complex organic molecules such as polysaccharides, fats, proteins, nucleosides and nucleotides.

Polymerisation of amino acids formed protoproteins, which later formed proteins. The formation of protein molecules is considered a landmark in the origin of life.

Why such a landmark? Because proteins include enzymes — biological catalysts. Proteins (enzymes) accelerated the rate of other chemical reactions. Once catalysts existed, chemistry that would otherwise take centuries could happen quickly, and the whole system began to change at a new speed.

e. Formation of Nucleic Acids

Nucleotides may have been formed by reaction between phosphoric acid, sugar and nitrogenous bases (purines and pyrimidines). A nucleotide is thus made of three parts, and all three were already lying in the primitive broth.

A number of nucleotides then joined together to form nucleic acids — RNA and DNA.

The decisive step came next. Nucleic acids acquired self-replicating ability — the capacity to make copies of themselves. Self-replication is a fundamental property of living forms. Once a molecule can copy itself, whatever changes appear in it can be passed on, and the door to heredity, and therefore to evolution, is finally open.

Q. Why is self-replication treated as the true turning point in the origin of life?

A. Because without copying, every useful molecule that formed would be lost when it broke down. With copying, a successful molecule leaves descendants, its variations are inherited, and better copies can gradually be favoured — which is exactly what evolution requires.

f. Formation of Protobionts or Procells

Nucleic acids, along with other inorganic and organic molecules, formed the first form of life, called protobionts. Protobionts are prebiotic chemical aggregates having some properties of a living system.

Protobionts are formed due to coacervation, that is, the aggregation of organic molecules into droplets. Oparin (1924) called these droplets coacervates, while Sidney Fox called his own version protenoids or microspheres. Coacervates are shown in Fig. 5.1.

Diagram

Fig. 5.1 – Coacervates: a large spherical droplet enclosing numerous smaller colloidal globules, with the boundary labelled and the droplets marked “Coacervates”

Coacervates are colloidal aggregations of hydrophobic proteins and lipids — in effect, lipoid bubbles. They grew in size by taking up material from the surrounding aqueous medium. As they grew, they became thermodynamically unstable and split into smaller units, comparable to the daughter cells of budding organisms. Growth and division, two hallmarks of life, thus appeared before life itself did.

Microspheres are protenoids formed from colloidal hydrophilic complexes surrounded by water molecules. These bodies may have had an outer double-membrane, like a primitive cell. Diffusion and osmosis may have occurred across this membrane, allowing the inside to be chemically different from the outside. They were more stable than coacervates.

It must be stated plainly: coacervates and microspheres were non-living colloidal aggregations — of lipids and of proteinoids respectively. They were not organisms. Yet they had some basic properties of living cells, such as growth and division. These colloidal aggregations turned into the first primitive living system, called eobionts or protocells.

Coacervates vs Microspheres | Feature | Coacervates | Microspheres | |—|—|—| | Proposed by | Oparin (1924) | Sidney Fox | | Made of | Hydrophobic proteins and lipids (lipoid bubbles) | Protenoids — colloidal hydrophilic complexes surrounded by water molecules | | Boundary | Colloidal droplet boundary | May have an outer double-membrane, like a primitive cell | | Exchange with surroundings | Absorb material from the surrounding aqueous medium | Diffusion and osmosis may occur across the membrane | | Stability | Less stable; split on becoming thermodynamically unstable | More stable than coacervates | | Status | Non-living aggregation, but shows growth and division | Non-living aggregation, but shows growth and division |

Protobiont vs Eobiont (A protobiont is a prebiotic aggregate — a non-living droplet with only a few life-like properties. An eobiont, or protocell, is the first primitive living system that these aggregates finally gave rise to.)

g. Formation of First Cell

When an RNA or DNA system developed within the protocells, they came to look like bacteria or viruses. Now the droplet no longer merely grew and split — it carried instructions. With genetic material inside, the protocell could regulate various metabolic activities in an organised, repeatable way.

The first cell was anaerobic and heterotrophic, and obtained energy by chemoheterotrophic processes. Each of these words follows logically from the conditions we have described. It had to be anaerobic because there was no free oxygen in the atmosphere. It had to be heterotrophic because it could not manufacture its own food — but it did not need to, since the primitive broth around it was already full of ready-made organic molecules, which it simply absorbed and broke down for energy.

Q1. If every living thing today comes from another living thing, how did the very first living thing appear?

A. It was not born from a parent. It was assembled, step by step, over hundreds of millions of years: simple gases → simple organic molecules in the “hot dilute soup” → complex polymers such as proteins and nucleic acids → self-replicating nucleic acids → coacervates and microspheres → eobionts → the first anaerobic, heterotrophic cell.

a carbon atom from the primitive atmosphere to the first cell 1. The carbon atom exists in the hot primitive atmosphere and combines with abundant, highly reactive hydrogen to form methane (\(CH_4\)). 2. Ultra-violet radiation, lightning and volcanic energy drive methane to react with ammonia and water vapour. 3. The carbon atom ends up in a simple organic molecule — say, an amino acid — which rains down and collects in a water body. 4. Because there is no free oxygen and no enzyme to destroy it, the amino acid survives and accumulates in the hot dilute soup. 5. Polymerisation links it with other amino acids into a protoprotein, and then into a protein — possibly an enzyme. 6. The protein, along with lipids, aggregates into a coacervate droplet that grows and splits. 7. Nucleic acids enter the droplet; the aggregate becomes an eobiont, then the first cell — and the carbon atom is now part of a living body.

Urey and Miller’s Experiment

All of this was, until 1953, only a chain of reasoning. Stanley L. Miller and his teacher Harold C. Urey provided the first experimental evidence in support of the chemical evolution theory of Oparin. Instead of arguing about the early earth, they built a small model of it.

They designed a glass apparatus called the spark-discharge apparatus, shown in Fig. 5.2.

Diagram

Fig. 5.2 – Urey and Miller’s spark-discharge apparatus: flask of boiling water supplying water vapour, connected to an upper chamber containing \(CH_4\), \(NH_3\) and \(H_2\) with two electrodes producing a carbon-arc spark, leading to a condenser with water in/water out, water droplets falling into a U-tube water trap, and the liquid containing organic compounds collected there; also label the outlet to the vacuum pump

The apparatus was first sterilized and evacuated — sterilized so that no living micro-organism could sneak in and be mistaken for newly formed life, and evacuated so that no present-day air, especially oxygen, remained inside.

Methane, ammonia and hydrogen gases were then pumped in the proportion of 1:2:2 into the glass chamber, recreating the reducing atmosphere of the primitive earth. A tube carrying water vapour was also connected to the chamber, standing in for the early oceans and the water vapour above them.

The lightning effect was mimicked by an electric discharge carbon arc spark inside the chamber. The processes of evaporation and precipitation — the ancient cycle of steam rising and rain falling — were simulated by the use of a heating mantle and a condenser respectively.

The mixture of \(CH_4\), \(NH_3\) and \(H_2\) was exposed continuously to electric discharge for several days, causing the gases to interact, after which these were condensed. The liquid collected in the U-tube turned brown — the first visible sign that something new had been made.

Chemical analysis of this liquid reported the presence of simple organic compounds: urea, amino acids, lactic acid and others. Amino acids — the very units of proteins — had appeared from nothing but gases, water and sparks.

This experiment strongly supports the view that the simple molecules present in the earth’s early atmosphere combined to form the organic building blocks of life.

Q. Did Miller and Urey create life in a flask?

A. No, and this distinction matters in examinations. They produced the building blocks of life — amino acids and other simple organic compounds — not a living cell. Their experiment supports step (c) of chemical evolution, not the whole of it.

RNA World Hypothesis

The Oparin–Haldane theory and the Miller–Urey experiment together give us an understanding that the pathway of the origin of life on earth goes from non-living to living. But a difficulty remains. The rule ‘like begets like’ requires the presence of a stable genetic material to store information, and cellular machinery to carry out the routine activities essential for survival.

Here lies a puzzle that looks like a vicious circle. In modern cells, DNA carries the information needed to make proteins — but proteins (enzymes) are needed to copy DNA. Which of the two, then, came first?

We are aware that certain proteins, which we call enzymes, catalyse the chemical reactions in the cell. Then, in 1980, Sidney Altman and Thomas Cech independently found out that RNAs can also act as biocatalysts. These catalytic RNAs are called ribozymes. For this discovery, Altman and Cech earned the Nobel Prize in Chemistry in 1989.

NoteDefinition

(Ribozyme — an RNA molecule that acts as a biological catalyst, speeding up a chemical reaction, as an enzyme does.)

This discovery breaks the circle. If a single molecule can both carry information and catalyse reactions, neither DNA nor protein had to come first — RNA could do both jobs by itself.

The discovery therefore provided important support for the RNA World hypothesis. The hypothesis suggests that early (first) life must have been based exclusively on nucleic acids, most probably RNA. Remarkably, it was first proposed by Carl Woese, Francis Crick and Leslie Orgel in 1960 — long before ribozymes were discovered. The idea was later confirmed by a discovery no one had anticipated when it was proposed.

Several facts support this hypothesis. RNA is found abundantly in all living cells. It is structurally related to DNA. Chains of RNA can evolve or undergo mutations, can replicate, and can catalyse reactions — that is, RNA is capable of everything the earliest life would have needed. This sequence is shown in Fig. 5.3.

Diagram

Fig. 5.3 – RNA World Hypothesis: RNA forms from inorganic sources → RNA self-replicates via ribozymes → RNA catalyses protein synthesis → membrane formation changes internal chemistry, allowing new functionality → RNA codes for both DNA and protein → proteins catalyse cellular activities → DNA becomes the master template

Besides, biomolecules like Acetyl-Co-A have a nucleotide in their molecular structure — a fossil of an older, RNA-dominated chemistry preserved inside our own metabolism. The major evidence, however, is the existence of the ribosome, the protein assembly unit of the cell. In the ribosome, the translation process is catalysed by RNA. (Refer to the chapter Molecular Basis of Inheritance.) In other words, in every cell of your body at this moment, protein is being made by an RNA catalyst.

The RNA World is not confined to ancient history. Because RNA can both carry a message and be read by our cellular machinery, it is now used directly in medicine — mRNA vaccines work by delivering a short RNA message into our cells, which our own ribosomes then translate into a protein that trains the immune system. The very versatility of RNA that made it a candidate for the first genetic material is what makes it useful in modern biotechnology.

These early molecules might have undergone repeated replication and mutation, forming varieties of RNA molecules with varying sizes and catalytic properties. Eventually they might have developed their own protein coats and the machinery needed to survive, assembling into the primitive cell. In due course, a double-stranded, more stable structure — DNA — might have been formed and taken over the job of storing information, which it does better than RNA because two strands protect the message and allow damage to be repaired from the other strand.

Thus the ongoing journey continued, and it resulted in the rich biodiversity we see on earth today. How that diversity arose from those first cells is the subject of the rest of this chapter.

order of chemical evolution (“Gases Make Simple Complex Nucleic Protobionts Cells” — Gases (\(CH_4\), \(NH_3\), \(H_2O\), \(H_2S\)) → Simple organic molecules → Complex organic molecules → Nucleic acids → Protobionts → first Cell.)

5.3 Organic Evolution

What the Word Means

The word evolution comes from Latin: e = from, and volvere = to roll. Literally, it means the act of unrolling or unfolding of nature — as though nature were a scroll being slowly opened, revealing more of itself with time.

Evolution brings about orderly changes from one form to another. The word “orderly” is important. These are not random, meaningless changes; they follow from what came before. The result is that descendants become different from their ancestors.

Organic evolution can be defined as the slow, gradual, continuous and irreversible changes through which the present-day complex forms of life developed (or evolved) from their simple pre-existing forms.

NoteDefinition

(Organic evolution — the slow, gradual, continuous and irreversible process by which the complex life forms of today have developed from simpler pre-existing forms.)

Each word in this definition carries weight. Slow and gradual tell us that evolution is not something you can watch in an afternoon. Continuous tells us it has never stopped — it is going on now. Irreversible tells us that a lineage does not simply turn back into its ancestor; even when a group returns to an old habitat, it does so with a new body built from what it had become.

According to Charles Darwin, evolution is ‘descent with modification’. This short phrase contains the whole idea: offspring descend from parents, and in each generation they are slightly modified. Add up small modifications over millions of generations, and you get a new kind of organism.

Q. If evolution is irreversible, how do we explain a whale — a mammal that lives in water like a fish?

A. The whale’s ancestors were land mammals that returned to water, but they did not become fish again. A whale still breathes air with lungs, is warm-blooded, and feeds its young with milk. It carries its mammalian history with it — which is exactly what “irreversible” means.

Lamarck’s Theory of Inheritance of Acquired Characters

Long before Darwin, another explanation had been offered. You have already studied Lamarck’s Theory of inheritance of acquired characters in Std. X.

According to this theory, the traits of an organism are acquired during its own lifetime — due to an internal force, changes in the environment, new needs, and the use and disuse of organs. An organ that is used constantly becomes better developed, while an organ that is not used degenerates.

Lamarck further held that these characters acquired during life are passed on to the offspring. After several generations, the accumulation of such acquired traits gives rise to a new species.

NotePrinciple / Law

(Lamarck’s Theory of Inheritance of Acquired Characters — characters acquired by an organism during its own lifetime, through internal force, new needs and the use or disuse of organs, are inherited by its offspring, and their accumulation over generations produces new species.)

The theory sounds reasonable at first. A blacksmith’s arms do grow stronger with use. But the crucial question is a different one: does his son inherit those stronger arms? This is precisely where the theory was tested — and failed.

Weismann’s Test and the Germplasm Theory

The theory was disproved by the German biologist August Weismann. In a long and patient study, he cut the tails of many rats and bred them, generation after generation. If acquired characters were truly inherited, the offspring should have been born with progressively shorter tails. Weismann continued the experiment through 21 generations, and could not find any change in the size of the tail even after 21 generations. Every litter was born with a perfectly normal tail.

Weismann concluded that variations produced in somatic cells (somatoplasm) — the ordinary body cells, such as those of the tail — are not inherited, while variations produced in germ cells (germplasm) — the reproductive cells that form gametes — are inherited by the next generation. On this basis he proposed the Theory of continuity of Germplasm.

NotePrinciple / Law

(Theory of Continuity of Germplasm — only changes occurring in the germ cells (germplasm) are transmitted to the offspring; changes occurring in the body cells (somatoplasm) during an organism’s lifetime are not inherited.)

The logic behind this becomes clear once you see how a body is built, as shown in Fig. 5.22. The germ cells are set aside early and are passed on, generation after generation, in an unbroken line. The body — the somatoplasm — is built afresh from them each time. Whatever happens to the body, therefore, does not reach the germ line. Cutting a tail damages the body, not the instructions from which the next body will be made.

Diagram

Fig. 5.22 – Weismann’s germplasm theory: a continuous germplasm line running from parent to offspring to grand-offspring, with the somatoplasm (body) branching off from it in each generation as a dead end; arrows show germplasm → germplasm continuity and germplasm → somatoplasm one-way development

Somatoplasm vs Germplasm | Feature | Somatoplasm | Germplasm | |—|—|—| | Cells involved | Somatic (body) cells | Germ cells that form gametes | | Fate | Dies with the individual | Passed on to the next generation | | Are changes in it inherited? | No | Yes | | Role in evolution | None directly | Provides the heritable variation on which evolution acts | | Weismann’s evidence | Cut tails of rats — no effect after 21 generations | Continuity of the germ line explains why offspring are born normal |

Acquired character vs Inherited variation (An acquired character develops in the body during an individual’s own lifetime — a scar, a tanned skin, a muscular arm — and dies with that individual. An inherited variation arises in the germ cells and is passed on. Only the second kind can drive evolution.)

This distinction is not academic. A weightlifter’s children are not born with extra muscle; a person who loses a limb in an accident does not have children born with one limb missing. But a change in the DNA of a sperm or an egg — for example, a mutation in the gene for haemoglobin — is passed to the child, and can spread through a population. This is why doctors ask about the genetic history of a family, not about injuries the parents happened to suffer.

With Lamarck’s mechanism ruled out, the central question of biology remained open: if acquired characters are not inherited, then what actually causes species to change over time? The answer proposed by Darwin is taken up in the next section.

organic evolution (Zoom in: evolution begins as a change in the genetic material of germ cells. Zoom out: those changes accumulate in populations, produce new species, and, over geological time, generate the entire diversity of life on earth.)

5.4 Darwinism

Before Darwinism, several theories were proposed to explain the process of organic evolution. Lamarck (1809) published his ‘Theory of origin of acquired characters’, which, as we have just seen, was ruled out.

What was needed was not merely another guess, but a mechanism — some natural process, visible in the living world itself, that could turn one species into another without anyone directing it. That mechanism was supplied by Charles Darwin (Fig. 5.4), in his Darwinism, also called the Theory of origin of species by Natural Selection.

Diagram

Fig. 5.4 – Portrait of Charles Darwin (1809–1882)

The Voyage and the Influences

Charles Darwin, as a naturalist, travelled extensively the world over from 27th December 1831 to October 1836, on board the survey ship HMS Beagle, and returned to England. For nearly five years he collected specimens, dug up fossils, and filled notebooks with observations. Based on his collections of living and fossil material, he published his book, On the Origin of Species by Means of Natural Selection, in 1859 — more than twenty years after the voyage ended.

Before publishing his book, Darwin was influenced by several thinkers, and each one gave him a piece of the argument.

He was much influenced by C. Lyell, a geologist, who pointed out that the natural forces which existed in the past are the same as those existing at present. This mattered enormously. If the same slow forces have always been at work, then the earth is very old, and slow processes have had enough time to produce very large changes.

Darwin himself observed the changes in the earth’s crust along the coast of South America, caused by natural forces — direct evidence that the ground beneath our feet is not fixed.

On the Galapagos islands and other nearby islands of the Archipelago, he observed a variety of strange plants and animals, particularly the variations between the tortoises and the finches from one island to another. Similar observations were also made by Wallace, who independently arrived at much the same idea.

He was also influenced by R. Malthus, an economist, who worked on human population and pointed out that the reproductive potential of humans is greater than the rate at which food can be produced. This results in multiplication of the human population without a corresponding increase in the food supply. Such an increase must lead to competition, and therefore to a struggle for existence within the human species.

Finally, Darwin was influenced by plant and animal breeders, who, by using artificial selection, had altered the characteristics of cultivated plants and domestic animals. If a farmer could reshape a species in a few decades merely by choosing which individuals breed, what could nature do by the same method over millions of years?

Artificial selection vs Natural selection (In artificial selection, a human being decides which individuals reproduce, and selects for characters useful to humans — bigger grain, more milk. In natural selection, the environment itself decides, and the characters favoured are those that help the organism survive and reproduce. The mechanism is the same; only the selecting agent differs.)

The Five Postulates of Darwinism

Darwinism is based on five main postulates. Read them in order, because they form a single chain of reasoning, summarised in FC 5.3 — each postulate makes the next one unavoidable.

Flowchart

FC 5.3 – The logic of Darwinism: Overproduction (far more offspring born than can survive) → Struggle for existence (for food, space, mate, escape from enemies) → Organic variations (individuals differ from one another) → Natural selection (individuals with favourable variations survive and reproduce; others perish) → Origin of new species (favourable variations accumulate over generations → speciation)

1. Overproduction (Prodigality of Nature)

Overproduction is the natural tendency of organisms to produce a larger number of progeny, in geometric ratio, for the perpetuation of the species. Nature is extravagant — it produces far more offspring than the environment can possibly support.

Darwin observed this prodigality in many species of plants and animals. A salmon fish, for example, produces about 28 lakh eggs in a single season. In a span of 750 years, a single pair of elephants would produce 19,000,000 elephants — and the elephant is one of the slowest-breeding animals on earth.

And yet, the size of a given species in a given area remains relatively constant, apart from the fluctuations that occur seasonally. Here is the puzzle that drives the entire theory: if reproduction is so lavish, why do populations not explode? The only possible answer is that most of the offspring produced must die before they can reproduce.

Q. If a single pair of elephants could produce 19,000,000 descendants in 750 years, why is the earth not knee-deep in elephants?

A. Because the resources — food, water, space — do not increase in the same way. Most young elephants never survive to breed. The gap between the number produced and the number that survive is exactly the room in which natural selection works.

2. Struggle for Existence

The tendency towards overproduction leads directly to a struggle for existence between the members of a population. Since the number of individuals produced is far greater than the resources available, they must compete.

This struggle is for a limited supply of food, for space and for a mate; it is also a struggle to overcome adverse environmental conditions and to escape from enemies. It is not necessarily a violent fight. A seedling that reaches sunlight before its neighbours is “struggling for existence” quite as much as two stags locking horns.

Imagine a thousand mango seeds falling from one tree in a small patch of ground. Every one of them could, in principle, become a mango tree. But the patch has room for only two or three. Some seeds will land in shade, some will be eaten, some will germinate but be crowded out by faster-growing neighbours. The seedling that finally survives is not luckier only — it is, in some respect, better suited to that particular patch of ground.

3. Organic Variations

If all individuals were identical, the struggle would be decided by chance alone and nothing would change over time. But they are not identical.

The organic variations speak for all kinds of differences that occur among individuals — in morphology, physiology, nutrition, habit, behavioural patterns, and so on. Darwin recognised these variations as the raw material for evolution. Variations were observed among members of the same species, and even between different species.

This is the single most important postulate to grasp, because everything that follows depends on it. Selection cannot create anything; it can only choose among differences that already exist.

4. Natural Selection

Organic variations can serve as evidence that some organisms are better adapted to survive under the existing environmental conditions than others. In the struggle for existence, organisms with favourable variations are selected by nature, while those with unfavourable variations perish.

According to Darwin, the principle by which useful variations are preserved by nature is called ‘Natural Selection’. H. Spencer named this process ‘survival of the fittest’.

NotePrinciple / Law

(Natural Selection — in the struggle for existence, individuals possessing variations that are favourable under the existing environmental conditions survive and reproduce, while those with unfavourable variations perish; thus useful variations are preserved by nature.)

Notice carefully what “fittest” means here. It does not mean the strongest, the largest, or the fastest. It means the best suited to that particular environment at that particular time. A thick fur coat is a superb adaptation in the Arctic and a fatal one in a desert. Fitness is measured only by one yardstick: how many surviving offspring an individual leaves behind.

“Survival of the fittest” vs “Survival of the strongest” (Fitness in biology means reproductive success in a given environment, not physical strength. A small, dull-coloured moth that escapes birds is fitter than a large, conspicuous one that is eaten.)

5. Origin of New Species (Speciation)

Favourable variations are transmitted from generation to generation. As a result, the successive generations become better adapted to their environment than the ones before them.

Gradually, these adaptations — along with a few new modifications appearing in each generation — become fixed in the life cycle of the organism. Given enough time, the accumulated differences become so great that the population is no longer the same species it started as. It has become a new species. This is speciation, and it is examined in detail later in the chapter.

Evidences for Darwinism
  1. Evolution of the long-necked giraffe. Giraffes with longer necks could pluck and eat more leaves from tall trees and woody climbers, and so were better fed than their short-necked companions. This adaptation became fixed in the population because it aided survival. The taller-born giraffe could survive in famine-struck, arid areas where only tall trees still bore leaves, and this adaptation was transmitted to their offspring. In this way, the present-day long-necked giraffe came into existence.

  2. Black-coloured peppered moths evolved gradually as a new form. This striking case — known as industrial melanism — is examined closely in Section 5.6, where you will see natural selection working within a single century.

  3. DDT resistance in mosquitoes. Intensive DDT spraying destroyed almost all types of mosquitoes. However, some mosquitoes already carried a variation that made them resistant to DDT, and these survived the onslaught of the spray. Such resistant mosquitoes survived and reproduced, giving rise to more resistant offspring, until the whole population was resistant and the insecticide no longer worked.

Q5. Why do some mosquitoes survive an insecticide spray that kills all the others — and what does this have to do with the origin of new species?

A. Because variation already existed in the mosquito population: a few individuals happened to carry a resistant form of a gene. The spray did not create resistance; it merely killed everyone who lacked it. The survivors passed resistance to their offspring, and in a few generations the population changed. Repeat such changes for long enough, and the accumulated differences give rise to a new species — which is precisely Darwin’s fifth postulate.

The same process is now one of the gravest problems in medicine. When an antibiotic is used carelessly, the few bacteria carrying a resistance gene survive the course of treatment and multiply, until the drug stops working against that infection altogether. This is why doctors insist that a course of antibiotics be completed, and why new antibiotics must constantly be developed. Every hospital fighting a drug-resistant infection is watching Darwin’s postulates play out in real time.

how a population of mosquitoes becomes resistant to DDT 1. In the original population, most mosquitoes are DDT-sensitive; a very few carry a variation that gives resistance. 2. DDT is sprayed. It is an unfavourable environmental condition — an agent of selection. 3. Sensitive mosquitoes die; the few resistant ones survive. 4. Only the survivors reproduce, so the resistance gene is passed to the next generation. 5. Its frequency rises sharply, since almost all parents now carry it. 6. After several rounds of spraying, nearly the entire population is resistant — the population has evolved, although not one individual mosquito ever “became” resistant during its own life.

Drawbacks and Objections to Darwinism

Darwinism was a landmark, but it was not complete. Darwin knew nothing of genes — Mendel’s work was published in his lifetime but was unknown to him. The gaps that follow are all, in one way or another, gaps about heredity.

  1. He considered minute fluctuating variations to be the principal factor in evolution. Many such small variations are not heritable, and so cannot be part of evolution. In other words, he was unable to distinguish between environmental and hereditary variations.

  2. He also did not distinguish between somatic and germinal variations, and considered all variations to be heritable — the very error that Weismann’s experiment exposed.

  3. He explained the ‘survival of the fittest’, but he did not explain the ‘arrival of the fittest’ — that is, where the favourable variations come from in the first place.

  4. He did not explain the cause, origin and inheritance of variations, nor the origin of vestigial organs, nor could he explain the extinction of species.

  5. According to natural selection, new species are formed by the gradual accumulation of useful variations. If this is so, then intermediate forms should exist between the old species and the new one. But in most cases such intermediate forms were not recognised. Moreover, Darwinism also could not explain the occurrence of neutral flowers, or the sterility of hybrids — for how can a character that leaves no offspring at all be favoured by selection?

Objection (c) is the deepest of them, and it points straight ahead. Darwin could explain what happens to variations once they exist. He could not explain how they arise. The very next theory — de Vries’ mutation theory — was an attempt to answer exactly that question.

5.5 Mutation Theory

Darwinism left one question unanswered: where do variations come from? An answer was proposed by Hugo de Vries in 1901, soon after the rediscovery of Mendel’s work in 1900 — a rediscovery that, for the first time, gave biologists a way of thinking about heredity in terms of discrete units.

The Evening Primrose

De Vries proposed this theory on the basis of his observations on seven generations of the plant evening primrose (Oenothera lamarckiana), which he grew and studied patiently in his garden, as shown in Fig. 5.23.

Diagram

Fig. 5.23 – Evening primrose (Oenothera lamarckiana): a normal plant with its flowers, alongside a variant offspring plant that differs sharply in size and form from the parent

He found that although most of the offspring resembled their parents in many characters, some of the offspring showed the appearance of sudden or spontaneous variation, clearly different from the phenotypic expression of the parent. These were not slight, graded differences of the kind Darwin had emphasised; they were abrupt jumps.

De Vries called these sudden variations mutations, or discontinuous variations.

Two further observations turned an oddity into a theory. First, the variant offspring produced variants, and not normal plants — that is, the change was inheritable and bred true. Second, some of these variants themselves produced still more variations. Since these sudden changes were heritable, they could serve as the raw material that Darwin’s theory badly needed. On this basis, de Vries proposed the Mutation theory.

NoteDefinition

(Mutation — a sudden, spontaneous, heritable change in an organism, appearing as a discontinuous variation that is clearly different from the parental phenotype.)

Q. Why did it matter so much that the variant primroses bred true?

A. Because a change that is not inherited dies with the individual and cannot drive evolution — as Weismann’s rats had already shown. Only a heritable change can be passed on, accumulate, and be acted upon by natural selection.

Main Features of Mutation Theory

The main features of the mutation theory are as follows. Their overall logic is summarised in FC 5.4.

  • Mutations are large, sudden, random and discontinuous variations appearing in a population.
  • These changes are inheritable, and they may not be directional — that is, a mutation does not appear because the organism needs it, and it does not point in any particular direction.
  • Mutations provide the raw material for organic evolution.
  • A mutation may be useful or harmful. Useful mutations are selected by nature.
  • Accumulation of these mutations over a period of time leads to the origin and establishment of new species.
  • Harmful mutations may persist in the population, or may get eliminated by nature.

Flowchart

FC 5.4 – Mutation theory: sudden, random mutation appears in a population → the change is heritable → branch: if useful → selected by nature → accumulates over generations → origin of a new species; if harmful → either eliminated by nature or persists in the population

Read the second and fourth points together, because that is where students most often go wrong. A mutation is random with respect to need. The mosquito did not mutate because DDT was sprayed; the mutation was already there, and the spraying merely revealed which individuals happened to carry it. Nature does not order the mutation — nature only edits the result afterwards.

Q. If mutations are random, how can evolution produce something as well-fitted as an eye or a wing?

A. Because two different processes are at work. Mutation supplies variation at random; selection then keeps the useful ones and discards the rest, generation after generation. Randomness supplies the options; selection makes the choice non-random.

The double nature of mutation — useful or harmful — is visible in human beings. A single change in the gene for the beta chain of haemoglobin produces sickle-cell anaemia, in which red blood cells become sickle-shaped and are destroyed easily. That mutation is clearly harmful. Yet, in regions where malaria is common, carriers of a single copy of the same mutated gene are more resistant to malaria and survive better than those without it. The same mutation is thus harmful in one environment and useful in another — proving that a mutation is not “good” or “bad” in itself; the environment decides.

Always remember 1. According to Darwin, variations are small and directional, whereas mutations are large, sudden, random and directionless. 2. Darwin believed that gradual, inheritable variations over a long period of time lead to speciation (the formation of new species), while de Vries believed that mutations are the cause of speciation. 3. A single-step large mutation is called saltation.

Darwin’s variations vs de Vries’ mutations | Feature | Darwin’s variations | de Vries’ mutations | |—|—|—| | Size of change | Small, minute | Large | | Manner of appearance | Gradual, continuous | Sudden, discontinuous | | Direction | Directional | Random, directionless | | Basis of speciation | Slow accumulation of small useful variations over a long time | Mutations themselves cause speciation | | Single large step | Not recognised | Called saltation |

Objections to Mutation Theory

Like Darwinism, the mutation theory could not stand alone. Three objections were raised against it.

  1. The large and discontinuous variations observed by Hugo de Vries were actually due to chromosomal aberrations — changes in whole chromosomes — whereas gene mutations usually bring about only minor changes. In other words, what de Vries had seen in his primroses was not the ordinary raw material of evolution.

  2. The rate of mutation is very low as compared with the requirement of evolution. Mutations alone occur far too rarely to account for the pace at which species have actually changed.

  3. Chromosomal aberrations have little significance in evolution, as they are quite unstable and are not reliably passed on.

Notice how the picture now stands. Darwin had a mechanism (natural selection) but no source of variation. De Vries had a source of variation (mutation) but no adequate mechanism, and too few mutations to work with. Each theory held a piece the other lacked.

The obvious step was to put them together, and to bring in everything that genetics, ecology and palaeontology had learned in the meantime. That combination is the Modern Synthetic Theory, taken up next.

Point mutation vs Chromosomal aberration (A point mutation, or gene mutation, is a change within a single gene and usually causes a minor change in phenotype. A chromosomal aberration is a change in the structure or number of whole chromosomes — the kind of large, unstable change that produced de Vries’ odd primroses.)

5.6 Modern Synthetic Theory of Evolution

Why a “Synthesis” Was Needed

Neither Darwin nor de Vries was wrong; each was incomplete. The Modern Synthetic Theory is the result of a true synthesis of all the biological disciplines. Studies drawn from genetics, ecology, anatomy, geography, palaeontology and other fields were pursued together to explain the mechanism of evolution. In this synthesis, due importance was given to both mutations and natural selection — mutation supplying the variation, selection deciding its fate.

The main contributors to the modern theory of evolution include R. Fischer, J. B. S. Haldane, T. Dobzhansky, J. Huxley, E. Mayr, Simpson, Stebbins, Fisher, Sewall Wright, Mendel and T. H. Morgan.

Stebbins, in his book, discussed five key factors that contribute to the evolution of new species: gene mutations, mutations in chromosome structure, mutations in chromosome number, genetic recombinations, natural selection, and reproductive isolation.

The Population, Not the Individual

Before going further, one shift of viewpoint must be made, and it is the heart of the modern theory. An individual is born with a fixed set of genes and dies with them; an individual cannot evolve. What changes over time is the population.

All individuals of the same species constitute a population. Populations occur in small groups of ‘interbreeding populations’. Such a small interbreeding group within a population is referred to as a Mendelian population.

NoteDefinition

(Mendelian population — a small group of interbreeding individuals of the same species, which shares a common pool of genes.)

The total genetic information encoded in the sum total of genes in a Mendelian population is called the gene pool. Simply put, the gene pool means the total number of genes of all the individuals in a population. The gametes produced by the individuals furnish the pool of genes for the next generation, from which the genes of that generation will be drawn.

NoteDefinition

(Gene pool — the sum total of all the genes, with all their alleles, present in all the individuals of an interbreeding population at a given time.)

The migration of individuals into or out of a population effectively alters the gene pool. The gene pool also changes as one generation is replaced by another in the Mendelian population. Thus, any change in the gene pool affects the population as a whole.

Genes are arranged linearly on the chromosome and each occupies a definite position, called a locus. According to Mendel, every gene that influences a trait has two alleles. The proportion of one particular allele in the gene pool, relative to the total number of alleles at that locus, is called the gene frequency (allele frequency).

NoteDefinition

(Gene frequency — the proportion of a particular allele in the gene pool, out of the total number of alleles present at that locus in the population.)

Now the definition of evolution itself can be made precise and measurable. Evolution, in the language of the modern theory, is simply a change in gene frequency in a population across generations. If the frequencies stay the same, the population is not evolving. If they shift, it is.

gene frequency (Zoom in: a gene frequency is decided by alleles sitting at a locus on a chromosome inside individual cells. Zoom out: the collection of all such frequencies is the gene pool of the population, and a shift in that pool over generations is what we call evolution.)

Q. Why do we say that a population evolves, but an individual does not?

A. Because an individual’s genotype is fixed at fertilisation and cannot change during life. What changes is the proportion of different alleles among the individuals — and proportions exist only in a group. An individual’s only role is to pass its genetic variation on to its offspring.

The Three Main Concepts

The modern synthetic theory comprises five main factors, which are broadly grouped under three main concepts:

  1. Genetic variations, caused by various aspects of mutation, recombination and migration;
  2. Natural selection; and
  3. Isolation.

Together, these three explain the evolution of species. The relationship between them is shown in FC 5.5.

Flowchart

FC 5.5 – Modern Synthetic Theory: Genetic variations (gene mutation, genetic recombination, gene flow, genetic drift, chromosomal aberrations) → variation in the gene pool → Natural selection (favourable variations reproduce more) → change in gene frequency → Isolation (geographical or reproductive) prevents gene flow between groups → separate gene pools → new species

a. Genetic Variations

The change in genes and in gene frequencies is known as genetic variation. Genetic variations are caused by the following factors.

i. Gene Mutation

A sudden, permanent, heritable change is called a mutation. A mutation can occur in the gene, in the chromosome morphology, and in the chromosome number.

A mutation that occurs within a single gene is called a point mutation or gene mutation. Since a gene carries the instructions for building a protein, a change in the gene changes the protein, and so leads to a change in the phenotype of the organism — causing variation.

ii. Genetic Recombination

Mutation is not the only source of new combinations. In sexually reproducing organisms, during gamete formation, an exchange of genetic material occurs between the non-sister chromatids of homologous chromosomes. This exchange is called crossing over.

Crossing over produces new genetic combinations, which result in variation. Importantly, it does not create new alleles; it simply deals the existing alleles into new hands.

Fertilization between opposite mating gametes then leads to further recombinations, resulting in phenotypic variations and causing a change in the frequencies of alleles.

Q. If recombination makes no new alleles, why is it so important for evolution?

A. Because selection acts on whole organisms, not on single genes. Two separate useful mutations that arise in two different individuals can never be tested together unless recombination brings them into the same body. Sexual reproduction, by constantly reshuffling alleles, generates the enormous variety of combinations on which selection can work.

iii. Gene Flow

Gene flow is the movement of genes into or out of a population. This gene movement may take place in the form of migration of organisms, or of gametes (for example, the dispersal of pollen), or even of segments of DNA (transformation).

Gene flow also alters gene frequency, and so causes evolutionary changes. A single migrating individual that breeds successfully adds its alleles to a gene pool that never had them before.

Gene flow is deliberately used in wildlife conservation. When a small, isolated population of an endangered animal — a tiger reserve cut off by farmland, for instance — begins to show poor health and low fertility, wildlife managers sometimes move a few individuals in from another reserve. The newcomers introduce fresh alleles into the gene pool, restoring variation to a population that had lost it.

iv. Genetic Drift

Any random fluctuation (alteration) in allele frequency, occurring in a natural population by pure chance, is called genetic drift.

Notice the words “by pure chance”. Genetic drift has nothing to do with fitness. An allele may disappear from a population not because it was harmful, but simply because the individuals carrying it happened not to reproduce.

For example, when the size of a population is severely reduced due to natural disasters such as earthquakes, floods or fires, particular alleles may be eliminated from the population altogether — regardless of whether they were useful or harmful.

Smaller populations have a greater chance of genetic drift. This follows from simple probability: in a population of ten individuals, the accidental death of two can wipe out an allele entirely; in a population of ten thousand, the same two deaths change almost nothing. Drift results in a change in gene frequency, and it is therefore an important factor in evolutionary change.

Think of a jar containing 100 marbles — 50 red and 50 blue — representing two alleles. If you draw 50 marbles at random to form the next generation, you will probably get roughly 25 of each; the frequency barely shifts. But if you draw only 4 marbles, you might easily get 4 red and 0 blue. The blue allele has vanished, not because blue was inferior, but because the sample was small. That is genetic drift.

v. Chromosomal Aberrations

The changes in chromosome number (gains and losses) and the changes in the morphological structure of chromosomes (deletion, inversion, and so on) together constitute the chromosomal aberrations. Since the order or sequence of genes on the chromosome is altered, the result is variation.

Chromosomal aberrations occur due to the following four changes, which are shown in Fig. 5.5.

  1. Deletion: Loss of genes from a chromosome.
  2. Duplication: Genes are repeated, or doubled in number, on the chromosome.
  3. Inversion: A particular segment of the chromosome is broken and gets reattached to the same chromosome in an inverted position, due to a \(180^\circ\) twist. There is no loss or gain of the gene complement of the chromosome — the same genes are present, but their order is reversed.
  4. Translocation: The transfer (transposition) of a part of a chromosome, or of a set of genes, to a non-homologous chromosome is called translocation. It is effected naturally by the transposons present in the cell.

Diagram

Fig. 5.5 – Chromosomal aberrations: for each type, a normal chromosome marked A B C D E F G H alongside the altered chromosome — Deletion (A B C E F G H, loss of a segment), Duplication (A B C B C D E F G H, repeat of a segment), Inversion (A D C B E F G H, a segment reversed), Translocation (M N O C D E F G H, a segment moved from one chromosome to another)

The four chromosomal aberrations | Aberration | What happens to the segment | Effect on gene number | Chromosome involved | |—|—|—|—| | Deletion | Segment is lost | Genes are lost | Same chromosome | | Duplication | Segment is repeated | Genes increase in number | Same chromosome | | Inversion | Segment is reversed through \(180^\circ\) | No loss or gain of genes; only the order changes | Same chromosome | | Translocation | Segment is transferred elsewhere | Genes are moved, not lost | A non-homologous chromosome |

Translocation vs Crossing over (Crossing over exchanges segments between homologous chromosomes and is a normal, regular event of meiosis. Translocation transfers a segment to a non-homologous chromosome and is an aberration.)

b. Natural Selection

According to Darwin, natural selection is the main driving force behind evolution. The modern theory keeps this idea, but restates it in the language of genes.

The theory holds that genetic variations arise within the population. The ‘fittest’ individuals will be at a selective advantage and will be more likely to produce more offspring than the rest. The ‘fit’ continue to enjoy greater survival and greater reproductivity. Over many generations, new species will eventually evolve.

Stated another way, natural selection is the process by which better-adapted organisms grow and produce a greater number of offspring in the population.

It brings about evolutionary changes by favouring the differential reproduction of genes, which brings about changes in gene frequency from one generation to the next generation. That last phrase is the whole modern definition in miniature: selection is not about who lives longest, but about whose alleles are more numerous in the next generation.

Selection against harmful mutations leads to a mutation balance, in which the allele frequency of harmful recessives remains constant generation after generation. Such alleles are never quite eliminated, because in a heterozygote the recessive allele is hidden from selection by the dominant one, and so it survives quietly and reappears in later generations.

Q. If natural selection removes harmful alleles, why do harmful recessive disorders still exist in human populations?

A. Because a recessive allele is only expressed in the homozygous condition. In heterozygous carriers it is masked, so selection cannot “see” it. New mutations keep adding such alleles, while selection removes only the few that appear in homozygotes — and the two rates settle into a mutation balance.

Industrial Melanism

Natural selection encourages those genes or traits that ensure the highest degree of adaptive efficiency between a population and its environment. Industrial melanism is one of the best examples of natural selection, and one of the very few in which human beings have watched the process happen within a single century (Fig. 5.6).

Diagram

Fig. 5.6 – Natural selection: a lichen-covered tree trunk with a grey-white peppered moth (Biston betularia) well camouflaged and a black moth (Biston carbonaria) clearly visible, alongside a soot-blackened trunk where the situation is exactly reversed; label both moths

In Great Britain, before industrialization (1845), grey-white winged moths (Biston betularia) were more in number than the black-winged moth (Biston carbonaria).

These moths are nocturnal, and during the day they rest on tree trunks — motionless and exposed. Their survival therefore depends entirely on not being noticed. The white-winged moth could camouflage itself (hide in the background) well against the lichen-covered trees, and this helped it to escape from predatory birds. The black-winged moth resting on the same lichen-covered trunks stood out sharply, was an easy victim for the predatory birds, and so its numbers remained low.

Then the environment changed. During the industrial revolution, a large number of industries came up in Great Britain. The industries released black sooty smoke that covered and killed the lichens growing on the trees, and turned the tree trunks black due to pollution.

This change became an advantage to the black-winged moth, which now camouflaged well against the black tree trunks, and its numbers increased. The white-winged moth, now conspicuous against the dark bark, became the victim of predatory birds, and its numbers were reduced.

Thus natural selection resulted in the establishment of a particular phenotypic trait under changing environmental conditions.

wing colour of the peppered moth (Wing colour matches the resting surface → predatory birds fail to detect the resting moth → the moth survives to breed → its colour allele increases in the gene pool. When the surface changes colour, exactly the same logic favours the opposite allele.)

Notice what did not happen. No moth turned black because of the soot. Both forms existed all along; pollution merely changed which of them the birds could see. The environment did not create the variation — it selected among variations that were already present.

proportion of dark moths before and after industrialisation (Imagine a graph of the percentage of dark (Biston carbonaria) moths on the y-axis against time on the x-axis, running from about 1845 through the industrial decades. Before industrialisation the line runs very low — dark moths are rare. As soot blackens the trunks, the line climbs steeply, and the dark form comes to dominate. The trend does not show moths changing colour; it shows the frequency of an already-existing allele rising, because birds are now eating the other form. This is exactly what “evolution is a change in gene frequency” looks like when it is plotted.)

c. Isolation

Variation and selection can change a population, but they cannot, by themselves, split it into two species. As long as individuals continue to interbreed, their genes keep mixing, and the population stays one gene pool. Something must first cut the gene flow. That something is isolation.

Isolation is the separation of the population of a particular species into smaller units, which prevents interbreeding between them. Any barrier that prevents gene flow — the exchange of genes between the isolated populations — is called an isolating mechanism.

NoteDefinition

(Isolation — the separation of a population of a species into smaller units in such a way that interbreeding between them is prevented, and gene flow between them is stopped.)

A number of isolating mechanisms operate in nature. They may promote divergence between the separated groups, and speciation may occur. The isolating mechanisms are of two types: geographical isolation and reproductive isolation.

I. Geographical Isolation

Geographical isolation is also called physical isolation. It occurs when an original population is divided into two or more groups by geographical barriers, such as a river, an ocean, a mountain range or a glacier. These barriers prevent interbreeding between the isolated groups.

Once separated, the groups are exposed to different kinds of environmental factors, and they acquire new traits by mutations. Since no gene flow occurs between them, the mutations arising in one group never reach the other. The separated populations therefore develop distinct gene pools, and they do not interbreed. In this way, new species have been formed by geographical isolation. For example, Darwin’s finches.

II. Reproductive Isolation

Reproductive isolation occurs due to a change in the genetic material, in the gene pool, and in the structure of the genital organs. It prevents interbreeding between populations even when they live in the same area.

Geographical isolation vs Reproductive isolation (In geographical isolation, the two groups are physically kept apart by a barrier such as a river or a mountain — they could interbreed if brought together. In reproductive isolation, the two groups may live side by side, but a biological barrier prevents successful mating or a fertile offspring.)

Types of Isolating Mechanisms

The isolating mechanisms are classified by when they act — before mating, or after it. The full classification is shown in FC 5.6.

Flowchart

FC 5.6 – Types of isolating mechanisms: Isolating mechanisms → branch A: Pre-mating (pre-zygotic) barriers — prevent fertilization and zygote formation → habitat (ecological) isolation, seasonal (temporal) isolation, ethological isolation, mechanical isolation; branch B: Post-mating (post-zygotic) barriers — act after mating → gamete mortality, zygote mortality, hybrid sterility

A. Pre-mating or Pre-zygotic Isolating Mechanisms

These mechanisms prevent fertilization and zygote formation. In other words, they act before any zygote is ever made, so no energy is wasted on offspring that cannot succeed.

  1. Habitat isolation (Ecological isolation): Members of a population live in the same geographic region but occupy separate habitats, so that potential mates do not meet.

  2. Seasonal or temporal isolation: Members of a population live in the same geographic region but become sexually mature in different years, or at different times of the year, so that their breeding periods never overlap.

  3. Ethological isolation: Due to specific mating behaviour, the members of the population do not mate. Courtship songs, dances or displays act as passwords — an individual that gives the wrong signal is simply not accepted.

  4. Mechanical isolation: Members of two populations have differences in the structure of their reproductive organs, so that mating is physically not possible.

B. Post-mating or Post-zygotic Barriers

These act after mating has taken place, and they ensure that even a successful mating leaves no fertile descendants.

  1. Gamete mortality: Gametes have a limited life span. Due to one reason or another, if the union of the two gametes does not occur within the given time, the result is gamete mortality.

  2. Zygote mortality: Here the egg is fertilized, but the zygote dies due to one or another reason, before it can develop.

  3. Hybrid sterility: Hybrids develop to maturity but become sterile, due to the failure of proper gametogenesis (meiosis). For example, the mule is an intergeneric hybrid, and it is sterile.

The reason for hybrid sterility is worth understanding rather than memorising. Meiosis requires chromosomes to pair up with their homologous partners. In a hybrid, the two sets of chromosomes have come from different species, so they do not match properly, pairing fails, and functional gametes cannot be formed. The hybrid may be strong and healthy in body, yet it is an evolutionary dead end.

Pre-zygotic vs Post-zygotic barriers | Feature | Pre-mating (pre-zygotic) | Post-mating (post-zygotic) | |—|—|—| | When it acts | Before fertilization | After fertilization | | What it prevents | Mating and/or zygote formation | Survival or fertility of the offspring | | Is a zygote formed? | No | Yes | | Examples | Habitat, seasonal, ethological, mechanical isolation | Gamete mortality, zygote mortality, hybrid sterility | | Energy cost to the parents | Low — no gametes are wasted | High — gametes and even offspring are wasted |

the four pre-mating barriers (“HSEM” — Habitat, Season, Ethology, Mechanics. Wrong place, wrong time, wrong behaviour, wrong fit — four different ways of never getting to fertilization.)

5.7 Mechanism of Organic Evolution

Having examined the theories one by one, we can now put the working machinery of evolution together in a single place.

One must give importance to the population while considering the mechanism of evolution. It is the population that evolves, and not its individual members. The individual’s role is only to pass on its genetic variation to its offspring; the individual itself cannot change its genes during its lifetime.

The following are the basic processes which bring about evolution: mutations, gene recombination, gene flow (migration), genetic drift, natural selection, isolation and speciation. Their combined action is summarised in FC 5.7.

Flowchart

FC 5.7 – Mechanism of organic evolution: Mutations + gene recombination → new genetic variation enters the gene pool → gene flow and genetic drift alter allele frequencies → natural selection favours the better-adapted variants → isolation stops gene flow between the diverging groups → speciation (a new species is formed)

Mutations

Mutations are permanent, heritable changes in the genetic material of an organism. They have already been described earlier in this chapter. Gene mutations will alter the genetic make-up of the individual and, through it, the gene pool of the population.

Mutation is the only process in this list that creates a genuinely new allele. Every other process merely shuffles, spreads, or filters the alleles that mutation has already supplied.

Gene Recombination

These are the variations produced due to the coming together of alleles during sexual reproduction. Gene recombinations occur due to three events: the random union of gametes at fertilization, the anaphasic separation of chromosomes during meiosis, and crossing over.

Notice that all three are shuffling events, and all three happen in every sexually reproducing organism, in every generation. This is why sexual reproduction, despite its costs, is so powerful: it guarantees a constant supply of fresh combinations for selection to test.

Gene Flow

Gene flow is the transfer of genes during interbreeding between populations that are genetically different. As explained earlier in this chapter, gene flow occurs due to emigration (individuals leaving) and immigration (individuals entering). It brings about changes in allele frequency.

Gene flow has an important secondary effect that is easy to miss: by mixing gene pools, it reduces the differences between populations. It therefore works against speciation — which is precisely why isolation is needed before two populations can become two species.

Genetic Drift

Any alteration in the allele frequency of a natural population by chance is called genetic drift. The concept of genetic drift was first given by Sewall Wright, and it is therefore also called the Sewall Wright effect.

For example, an allele may be eliminated from a population because of events such as the accidental death of an organism before mating. Genetic drifts are random, or directionless — they do not push a population towards better adaptation.

The effect of genetic drift is more significant in a small population than in a large population. Due to genetic drift, some alleles of a population are lost or reduced by chance, while some others may be increased.

Founder Effect

Sometimes, a few individuals become isolated from a large population and produce a small new population in a new geographical area. Because these few founders carry only a small, accidental sample of the parent population’s alleles, the allele frequency of the new population becomes suddenly different from that of the original one.

The original members that drifted away and established the new population become the ‘founders’, and the effect is called the founder effect.

NoteDefinition

(Founder effect — the sudden change in allele frequency that occurs when a small group of individuals separates from a large population and establishes a new population, carrying with it only a small sample of the original gene pool.)

The founder effect can be seen in human populations. Certain communities that were founded, generations ago, by a small number of settlers who then married largely within the group show unusually high frequencies of particular inherited disorders — not because those disorders are advantageous, but simply because one or two of the original founders happened to carry the allele. In such communities, an allele that is rare in the world at large may be common.

Bottleneck Effect

The bottleneck effect is a type of genetic drift, seen when much of a population is killed due to a natural disaster — a tsunami, floods, a tornado, a disease epidemic, and so on — and only a few individuals are left to begin a new population.

The name is a picture of the process. Think of tipping a jar of mixed marbles through a narrow neck: only a few marbles get through, and which colours they are is largely a matter of chance. When the population recovers in numbers, it recovers from those few survivors, and its gene pool is permanently poorer in variation than before.

The cheetah is the classic example. Cheetah populations are known to have passed through a severe bottleneck in the past, and today cheetahs show remarkably little genetic variation — so little that skin grafted from one unrelated cheetah to another is often not rejected. This lack of variation makes the species dangerously vulnerable: a single new disease could sweep through the whole population, because there are few individuals with different alleles that might resist it.

Founder effect vs Bottleneck effect (In the founder effect, a few individuals leave and start a new population elsewhere; the original population survives. In the bottleneck effect, most of the population dies, and the survivors rebuild in the same place. Both are genetic drift, and both leave a small gene pool.)

Q. Both genetic drift and natural selection change allele frequency. What is the essential difference between them?

A. Natural selection changes allele frequency according to fitness — useful alleles increase. Genetic drift changes it by chance alone, so a useful allele can be lost and a useless one can spread. Selection is directional; drift is directionless.

Natural Selection

Natural selection is the process by which better-adapted individuals, carrying useful variations, are selected by nature and leave a greater or larger number of progenies. This is called differential reproduction.

Selection, however, does not always work in the same direction. Depending on which part of the range of variation is favoured, three types of natural selection are recognised.

Types of Natural Selection

To follow this, picture the population’s variation for a trait — say, body weight — plotted as a curve, with the number of individuals on the y-axis and the character value along the curve. Most individuals cluster near the average, and fewer lie at the extremes. Selection can now do one of three things: cut off both extremes, cut off one extreme, or cut out the middle.

a. Stabilizing Selection (Balancing Selection)
  1. Here, more individuals of a population acquire the mean character value.
  2. It tends to favour the intermediate forms and eliminate both the phenotypic extremes. For example, a greater number of infants with intermediate birth weight survive better as compared with those who are over-weight or under-weight.
  3. It reduces variation in the population.
  4. It does not lead to evolutionary change, but tends to maintain phenotypic stability within the population; it is therefore described as stabilizing selection.
  5. Genetically, stabilizing selection represents a situation where a population is already well adapted to its environment.

This last point explains the whole type. If a population is already suited to a stable environment, then any departure from the average is a departure from what works — so selection punishes change and preserves the existing state, as shown in Fig. 5.7.

Diagram

Fig. 5.7 – Stabilising selection: a bell-shaped curve of number of individuals against time/character value, with two downward arrows marked “selection against both extremes”; the dotted original population curve is broad, and the solid curve of the population after selection is tall and narrow

b. Directional Selection
  1. In this type, more individuals acquire a value other than the mean character value.
  2. Natural selection acts to eliminate one of the extremes of the phenotypic range and to favour the other — for example, the systematic elimination of homozygous recessives.
  3. Directional selection operates for many generations, and it results in an evolutionary trend within a population, with the peak of the curve shifting in one direction (Fig. 5.8).
  4. Examples: industrial melanism, DDT-resistant mosquitoes, and similar cases.

Directional selection is the type that produces visible evolutionary change, and it is what you should expect whenever the environment itself changes in a consistent direction.

Diagram

Fig. 5.8 – Directional selection: a curve of number of individuals against time/character value, with a single downward arrow marked “selection against an extreme”; the dotted original population curve and the solid curve after selection, the peak having shifted to one side

c. Disruptive Natural Selection
  1. Here, a greater number of individuals acquire the peripheral character values at both ends of the distribution curve.
  2. Nature selects the extreme phenotypes and eliminates the intermediate ones. Hence two peaks are formed in the distribution of the trait (Fig. 5.9).
  3. This kind of selection is rare.
  4. It has an effect on the entire gene pool of a population, considering all mating types or systems.
  5. Example: it was observed in the different beak sizes of African seed-cracker finches. The birds have beaks of different sizes, and they feed on seeds. The available seeds were of two kinds — small and large. Large-beaked birds could feed on the large seeds, while small-beaked birds could feed on the small seeds, and the numbers of both increased. The intermediate-beaked birds were unable to feed efficiently on either type of seed, so their population decreased gradually and was then eliminated by natural selection.

Diagram

Fig. 5.9 – Disruptive selection: a curve of number of individuals against time/character value, with a downward arrow in the centre marked “selection against the intermediates”; the dotted original single-peaked curve becomes a solid two-peaked curve after selection

The seed-cracker example repays a second look. Being “average” is usually the safest thing to be — but not here. When the food supply itself comes in two separate sizes, an average beak is the one that fits nothing. Disruptive selection is therefore the one type that can split a single population into two distinct groups, and it is an important route to the formation of new species.

reading the three selection curves (Fig. 5.7, 5.8, 5.9) (In all three graphs, the y-axis shows the number of individuals and the horizontal axis shows the range of a character; the dotted line is the original population and the solid line is the population after selection. Ask two questions of each graph. Where do the arrows point? — the arrows mark the individuals being removed. What happened to the peak? — in Fig. 5.7 the peak stays in the same place but becomes narrower and taller (variation reduced, no evolutionary change). In Fig. 5.8 the peak shifts sideways (an evolutionary trend). In Fig. 5.9 the single peak becomes two peaks (the population splits). If you can read the peak, you can name the selection type — which is exactly what diagram-based NEET questions on this topic demand.)

Stabilizing vs Directional vs Disruptive selection | Feature | Stabilizing | Directional | Disruptive | |—|—|—|—| | Individuals favoured | Mean (intermediate) | One extreme | Both extremes | | Individuals eliminated | Both extremes | The other extreme | Intermediates | | Effect on the curve | Peak stays; curve narrows | Peak shifts in one direction | One peak becomes two | | Effect on variation | Reduced | Shifted | Increased; population splits | | Evolutionary change | Does not lead to evolutionary change | Produces an evolutionary trend | Can lead to two distinct forms | | Example | Survival of infants of intermediate birth weight | Industrial melanism; DDT-resistant mosquitoes | Beak size in African seed-cracker finches | | How common | Common | Common | Rare |

the three types of selection (Stabilizing = Same. Directional = Different. Disruptive = Divided. The peak stays the same, shifts to something different, or divides into two.)

Isolation

Isolation is the separation of a single interbreeding population into subunits. Isolation restricts gene flow between the discrete (non-continuous) populations, because of different barriers such as geographical barriers. (This part has already been explained in detail earlier in this chapter.)

Speciation

The subunits of a single interbreeding population, separated by geographical barriers such as a river, mountains, a desert or a sea, become isolated in such a way that their interbreeding is prevented. This will finally lead to the origin of a new species — that is, to speciation. (Speciation is discussed in detail ahead in this chapter.)

Putting the seven processes together, the mechanism of evolution can be stated in one sentence: mutation and recombination create variation; gene flow and genetic drift move allele frequencies about; natural selection sorts the variation according to fitness; and isolation preserves the differences long enough for speciation to occur.

5.8 Hardy–Weinberg’s Principle

A Ruler Against Which Evolution Can Be Measured

We have said that evolution is a change in gene frequency. But how would we ever know that a frequency has changed unless we first knew what it should look like when nothing is happening?

This is exactly what the Hardy–Weinberg principle provides. It describes an imaginary, non-evolving population — a baseline. Any real population that departs from this baseline must be evolving, and the size of the departure tells us how much.

The principle is also known as Hardy–Weinberg’s equilibrium law. The law states that ‘at equilibrium point, both the gene (allele) frequency and the genotypic frequency remain constant from generation to generation.’

The Conditions

This equilibrium occurs only under a strict set of conditions. It occurs only in a population that is:

  • diploid, that is, carrying two sets of chromosomes;
  • sexually reproducing;
  • large in size;
  • freely interbreeding, with random mating; and
  • free from selection or any other factor that could change the allele frequency.
NotePrinciple / Law

(Hardy–Weinberg Principle — in a large, diploid, sexually reproducing, freely interbreeding population, in which mating is random and no selection, mutation, migration or other factor is acting to change allele frequency, both the allele frequencies and the genotypic frequencies remain constant from generation to generation.)

Every one of these conditions is examination-critical, and each is there for a reason. The population must be large, because in a small population genetic drift alone would shift the frequencies by chance. Mating must be random, because if individuals choose partners of a particular genotype, some alleles will be over-represented in the next generation. And there must be no selection, because selection is, by definition, a change in frequency.

Q. Why is a principle that describes a population where nothing happens considered so important?

A. Because it is a null hypothesis. It tells us what frequencies to expect if no evolutionary force is acting. If the observed frequencies differ from the expected ones, we know at once that some force — selection, drift, mutation, gene flow or non-random mating — must be at work, and we can go looking for it.

The Equations

Consider a single locus with two alleles, A and a. Let the frequencies of these two alleles be \(p\) and \(q\) respectively.

Since these are the only two alleles at that locus, every allele in the gene pool must be either A or a. The allele frequency for any locus is therefore always one:

\[p + q = 1\]

Now, in a diploid organism, each individual carries two alleles at this locus, one from each parent. The genotypic frequencies of both alleles taken together are therefore represented by the square of the allele frequencies:

\[(p + q)^2 = 1\]

The binomial expansion of this is:

\[p^2 + 2pq + q^2 = 1\]

Here each term corresponds to one genotype, and this is the step to understand rather than memorise:

  • \(AA = p^2\) — the chance of drawing an A allele from the father and an A allele from the mother, that is, \(p \times p\);
  • \(aa = q^2\) — likewise, \(q \times q\);
  • \(Aa = 2pq\) — the heterozygote can be formed in two ways (A from father and a from mother, or a from father and A from mother), and so the term carries the factor 2.

Hence \(p^2 + 2pq + q^2 = 1\). This is simply the binomial expansion of \((p + q)^2\).

In these expressions, \(p\) = frequency of the dominant allele A, \(q\) = frequency of the recessive allele a, \(p^2\) = frequency of the homozygous dominant genotype (AA), \(2pq\) = frequency of the heterozygous genotype (Aa), and \(q^2\) = frequency of the homozygous recessive genotype (aa). All of these are proportions, and so they have no units.

Explanation by the Punnett Square

This can be explained by a Punnett square, as follows. The gametes of one parent, carrying A with frequency \(p\) and a with frequency \(q\), are set against the gametes of the other parent, and every possible union is filled in.

Hybrid A a
A (p) a (q)
Hybrid Aa — A (p) AA (\(p^2\)) Aa (\(pq\))
Hybrid Aa — a (q) Aa (\(pq\)) aa (\(q^2\))

Look at the four boxes. AA appears once, giving \(p^2\); aa appears once, giving \(q^2\); and Aa appears in two boxes, giving \(pq + pq = 2pq\). This is where the factor of 2 in the middle term comes from — it is not an arbitrary number, it is simply the count of the boxes.

Like the allele frequencies, the genotypic frequencies together are also equal to 1:

\[AA + 2Aa + aa = 1\]

Allele frequency vs Genotypic frequency (Allele frequency counts alleles in the gene pool, and always sums to 1 as \(p + q = 1\). Genotypic frequency counts individuals by their genotype, and sums to 1 as \(p^2 + 2pq + q^2 = 1\). A common error in numerical problems is to take the frequency of recessive individuals as \(q\) instead of \(q^2\).)

Q. In a population, 16 per cent of individuals show a recessive disorder. Which term of the equation does that 16 per cent represent?

A. It represents \(q^2\), the frequency of the homozygous recessive genotype — not \(q\). So \(q^2 = 0.16\), giving \(q = 0.4\), and therefore \(p = 1 - 0.4 = 0.6\). Once you have \(p\) and \(q\), every other frequency follows.

What Disturbs the Equilibrium

There are a few factors which affect or change the Hardy–Weinberg equilibrium: gene migration (gene flow), genetic drift, mutation, genetic recombination, natural selection and non-random mating.

You will recognise every item on this list. These are precisely the processes described in Section 5.7 as the mechanisms of evolution. That is not a coincidence — it is the whole point. The forces that break Hardy–Weinberg equilibrium are exactly the forces that cause evolution.

If these factors do not occur in the population, then the population is genetically stable, or a non-evolving population. The relationship is set out in FC 5.8.

Flowchart

FC 5.8 – Hardy–Weinberg equilibrium: Population satisfies all conditions (large, diploid, sexually reproducing, random mating, no selection) → allele and genotypic frequencies remain constant → non-evolving population; if any factor operates — mutation, gene flow (migration), genetic drift, recombination, natural selection, or non-random mating → allele frequencies change → equilibrium is disturbed → the population evolves

Doctors and genetic counsellors use this principle every day. Suppose a recessive genetic disorder affects 1 in 10,000 newborns in a community. Then \(q^2 = 0.0001\), so \(q = 0.01\), and \(p = 0.99\). The frequency of carriers — heterozygotes who are perfectly healthy but can pass the allele on — is \(2pq = 2 \times 0.99 \times 0.01 = 0.0198\), or about 2 per cent, which is roughly 1 person in 50. This is a striking result: for every one affected child, about two hundred healthy carriers are walking about unaware. It is why carrier screening, rather than waiting for affected births, is the basis of genetic counselling programmes.

Under which conditions will the gene frequency of a population remain constant from one generation to the next? List each condition and, for each one, state briefly what would happen to the gene frequency if that condition were violated.

In a large, randomly mating population of 1000 diploid individuals, 90 individuals are homozygous recessive (aa) for a particular gene. Assuming the population is in Hardy–Weinberg equilibrium, find the frequency of the recessive allele (q), the frequency of the dominant allele (p), and the expected number of heterozygous (Aa) individuals in the population.

In a population at Hardy–Weinberg equilibrium, the frequency of the dominant allele A is 0.7. Calculate the frequencies of the AA, Aa and aa genotypes, and verify that the three genotypic frequencies add up to 1.

the Hardy–Weinberg conditions (“No MMSDN” — No Mutation, no Migration, no Selection, no Drift (so the population must be large), and no Non-random mating. Remove all five, and the gene pool stands still.)

5.9 Adaptive Radiation

The process of evolution which results in the transformation of an original species into many different varieties is called adaptive radiation.

The word “radiation” is a picture of what happens. From a single ancestral stock, lines of descent spread outwards in different directions — like rays from a centre — each one becoming fitted to a different way of life. The pattern arises because the descendants of one species find themselves in different habitats, facing different food supplies and different enemies, and natural selection therefore pulls each group along a different path.

NoteDefinition

(Adaptive radiation — the evolutionary process in which a single ancestral species gives rise to many different varieties or species, each adapted to a different habitat or way of life.)

Darwin’s Finches

Darwin’s finches are one of the best examples of adaptive radiation. During his visit to the Galapagos Islands, Charles Darwin noticed a variety of small birds. These birds are called Darwin’s finches (Fig. 5.10).

Diagram

Fig. 5.10 – Darwin’s finches: a fan of finch species radiating outwards from a common ancestral finch at the centre, each bird drawn with a distinctly different beak — heavy seed-crushing beaks, slender probing beaks, and sharp insect-catching beaks — all against the Galapagos island background

Darwin concluded that the American mainland species of bird was the original one, from which the finches had migrated to the different islands of the Galapagos. On reaching these islands, they adapted to the different environmental conditions found on each.

From the original seed-eating features, many other forms evolved, with altered beaks, developing insectivorous features. The chain of events is set out in FC 5.9.

Flowchart

FC 5.9 – Adaptive radiation of Darwin’s finches: original seed-eating finch on the American mainland → migration to the different Galapagos islands → geographical isolation of the island populations → different food and conditions on each island → natural selection acts on beak variations → beaks altered for different diets (large seed-crushers, small seed-eaters, insect-eaters) → 14 distinct species from one ancestor

the beak of a finch (A heavy, deep beak → generates the force needed to crack hard, large seeds → the bird can exploit a food source others cannot. A slender, pointed beak → can be pushed into crevices and probe bark → the bird can take insects. The same ancestral beak, reshaped by selection in different directions, opens completely different ways of earning a living — which is why the beak, and not the wing or the foot, is the organ that diverged most.)

Q. Why did the finches diverge on the islands, but not on the mainland?

A. Because the islands supplied two things the mainland did not — geographical isolation, which stopped gene flow between the island populations so that each could go its own way, and a set of empty niches with no established competitors, so that any variant able to exploit a new food source was rewarded rather than crowded out.

Australian Marsupials

Another example of adaptive radiation is that of the Australian marsupials. In Australia there are many marsupial mammals, all of which evolved from a common ancestor.

Here the same principle worked on a whole continent. Isolated from the rest of the world, a single marsupial stock radiated into forms that burrow, forms that graze, forms that climb, forms that leap across open grassland, and forms that hunt — each occupying the kind of role filled elsewhere in the world by placental mammals.

Q. Adaptive radiation produces many different species from one ancestor. What does that tell you about the direction of evolution?

A. That evolution has no single direction. It is not a ladder climbing towards one “higher” form. Selection simply pushes each population towards whatever suits its own environment — and since environments differ, the lines of descent spread apart. This spreading apart is called divergent evolution, and adaptive radiation is exactly that.

Keep this idea of divergence in mind. In the next section you will meet homologous organs — structures built to the same underlying plan but put to entirely different uses — and you will see that they are simply the anatomical record of the very process described here.

5.10 Evidences of Organic Evolution

The theory of organic evolution states that the present-day complex organisms have originated from earlier, simpler forms of life. That is a large claim about events no human being ever saw. It must therefore be supported by evidence.

The process of evolution is supported by evidences provided by various branches of biology: palaeontology, comparative anatomy (morphology), embryology and molecular biology. Each of these lines of evidence is independent of the others — and yet all of them point to the same conclusion, which is what gives the theory its strength.

A. Palaeontology

The study of ancient life with the help of fossils is called palaeontology. Fossils are the dead remains of plants and animals that lived in the past, preserved in various geological layers.

NoteDefinition

(Fossil — the preserved remains, impression or trace of a plant or animal that lived in the past, found buried in the layers of the earth’s crust.)

  • The study of fossils provides the most convincing and direct evidence of evolution. It is direct because a fossil is not an argument — it is the organism itself, or its imprint, lying in the rock.
  • Fossils are formed in sedimentary rocks, in amber (yellowish fossil resin), in ice, in peat bogs, and so on.
  • During fossilization, the primitive forms of organisms occupy the older, lower layers, and the advanced forms occupy the upper, more recent layers of the earth.

That third point is the most important one, and it deserves a moment’s thought. Sediment settles layer upon layer, so the deeper a layer lies, the older it is. When we dig down and find simple organisms below and complex organisms above — never the reverse — the rock itself is recording the order in which life appeared. This is the closest thing biology has to a photograph of the past.

why sedimentary rock preserves the sequence of life (Sediment is deposited layer upon layer over time → older layers are buried deeper, newer layers lie on top → any organism trapped in a layer is trapped in a known time slot → the vertical order of fossils gives us the chronological order of life.)

Types of Fossils
  1. Actual remains: These are the most common type of fossils. Plants, animals and human bodies that got embedded in the permafrost of arctic or alpine snow remain preserved in the actual state — for example, the Wooly Mammoth of Siberia, found frozen with its flesh, hair and even its last meal intact. Amber, or hardened resin, contains the preserved bodies of many insects and arthropods.

  2. Moulds: These are the hardened encasements formed in the outer parts of organic remains, which later decayed leaving cavities behind. The body parts of the plant or animal decay, but the impression remains and becomes permanent. Footprints, for example, are formed in this manner.

  3. Casts: These are hardened pieces of mineral matter deposited in the cavities of moulds. If the mould is the hollow, the cast is the filling — a solid replica of the original body.

  4. Compressions: Here the internal structure is absent, but a thin carbon film indicates the outline of the external features. The organism has been flattened and reduced to a carbon impression, yet its shape survives.

Mould vs Cast | Feature | Mould | Cast | |—|—|—| | What it is | The hardened impression left after the body decays | Mineral matter that has filled the cavity of a mould | | Form | A hollow or cavity | A solid replica | | Records | The outer surface of the organism | The shape and volume of the organism | | Example | Footprints | A mineral filling within a footprint or shell mould |

Mould vs Cast (A mould is a hollow impression left behind by a body that has decayed. A cast is the solid mineral filling of that hollow. The mould is the negative; the cast is the positive.)

Significance of Palaeontology
  1. It is useful in the reconstruction of phylogeny — the evolutionary family tree of a group.
  2. It helps in studying the various forms and structures of extinct animals.
  3. It provides a record of the missing link between two groups of organisms.
  4. It helps in the study of the habits of extinct organisms.
  5. It provides the types of evidence described below.
Archaeopteryx lithographica

Archaeopteryx lithographica is a fossilized, crow-sized, toothed bird found in Jurassic rocks in Germany. It is known as the missing link between reptiles and birds, because it shows the characters of both (Fig. 5.11).

Diagram

Fig. 5.11 – Archaeopteryx: a crow-sized feathered animal with a beak bearing teeth, scales on the body, long feathered tail, wings, and clawed digits on the forelimb; label beak, teeth, scales, feathers, wings and clawed digits

Reptilian characters: 1. Presence of a long tail, claws and scales on the body. 2. Single-headed ribs. 3. Abdominal ribs are present, which look like the ribs of a crocodile. 4. Jaws with homodont teeth — that is, teeth that are all of the same kind. 5. Sternum without a keel. 6. Bones are solid (non-pneumatic), unlike the hollow, air-filled bones of a modern bird. 7. Hind limbs had four clawed digits.

Avian characters: 1. Feathery exoskeleton. 2. Forelimbs are modified into wings. 3. Jaws are modified into a beak. 4. Skull bone is completely fused. 5. Large rounded cranium. 6. Cranium with large orbits and a single condyle. 7. Limb bones are bird-like. 8. Hind limbs with four toes, of which the first toe is opposable.

Look carefully at what the reptilian list contains: a keel-less sternum and solid bones. A modern bird needs a keeled sternum to anchor the powerful flight muscles, and hollow bones to stay light. Archaeopteryx had neither. It possessed feathers and wings, and yet its skeleton was still that of a reptile — it was a bird still under construction.

Thus, from the above study, it is very clear that birds evolved from reptiles. Huxley justified this by calling birds ‘glorified reptiles’.

Reptilian vs Avian characters of Archaeopteryx | Feature | Reptilian character | Avian character | |—|—|—| | Body covering | Scales on the body | Feathery exoskeleton | | Jaws | Homodont teeth present | Jaws modified into a beak | | Forelimb | Clawed digits | Modified into wings | | Sternum | Without a keel | — | | Bones | Solid (non-pneumatic) | Limb bones bird-like | | Tail | Long tail | — | | Skull | Single condyle | Completely fused; large rounded cranium |

Do you know? The first fossil of Archaeopteryx was found in the Jurassic rocks of Bavaria. It was discovered in 1861 and preserved in the British Museum by Andreas Wagner. The second specimen, found in 1877 and known as Archaeornis, is kept in the Berlin Museum.

Complete the following chart by naming the connecting link, or the two groups it links.

Animal Connecting link between
1. Balanoglossus ……………………………..
2. ………………. Annelida and Arthropoda
3. Lung fishes ……………………………..
4. ………………. Reptiles and mammals
5. Seymouria ……………………………..
6. Ichthyostega Fishes and Amphibia
B. Morphology and Anatomy

Morphology deals with the study of external structures, while anatomy deals with the study of internal structures. From a comparative study of morphology and anatomy, we can understand the evolutionary relationships between organisms, in the form of homologous, analogous and vestigial organs.

The reasoning here is simple but profound. If two organisms inherited a structure from a common ancestor, that structure should have the same underlying plan, even if it has since been put to very different uses. And that is exactly what we find.

a. Homologous Organs

Homologous organs are those organs which are structurally similar but perform different functions.

NoteDefinition

(Homologous organs — organs that have the same basic structural plan and a common embryonic origin, inherited from a common ancestor, but which have been modified to perform different functions.)

Examples:

  1. The forelimbs of vertebrates such as the lizard, bird, bat, horse, whale and man. All of them have the same set of bones in their forelimbs — humerus, radius–ulna, carpals, metacarpals and phalanges — arranged in the same order (Fig. 5.12). The forelimbs of these vertebrates are structurally similar, but they perform entirely different functions: the bat’s forelimb flies, the whale’s swims, the horse’s runs, and the human’s writes and grasps.

  2. The vertebrate heart and brain.

  3. In plants, the thorns of Bougainvillea and the tendrils of Cucurbita represent homology — both are modified stems, arising in the same position, one turned into a weapon and the other into a climbing organ. The thorns of Bael and the tendrils of passion flower are likewise homologous.

Diagram

Fig. 5.12 – Homologous organs: (A) forelimbs of lizard, horse, whale, bat, bird and man drawn side by side with corresponding bones shaded alike and labelled humerus, radius, ulna, carpals, metacarpals, phalanges; (B) thorn of Bougainvillea and tendril of Cucurbita, both shown arising in the axil of a leaf on the stem

The structural similarities between homologous organs indicate that these organisms have a common ancestry. And the differences between homologous organs are examples of divergent evolution, or adaptive radiation — the very process described in the previous section, now written into the bones.

Q4. Why do the flipper of a whale, the wing of a bat and your own arm contain exactly the same set of bones?

A. Because all three are homologous organs, inherited from a common vertebrate ancestor whose forelimb already had a humerus, a radius and ulna, carpals, metacarpals and phalanges. Evolution did not design each limb afresh for its job — it could only modify the plan it inherited. That is why a swimming flipper, a flying wing and a grasping arm are built from the same bones in the same order, and it is exactly what “descent with modification” predicts.

the vertebrate forelimb (One inherited bone plan → bones lengthened and webbed → a bat’s wing for flight; the same bones shortened, flattened and packed → a whale’s flipper for swimming; the same bones with a mobile, opposable thumb → a human hand for grasping. Different functions, one blueprint — because the blueprint was inherited, not designed.)

b. Analogous Organs

Analogous organs are those which are structurally dissimilar but functionally similar. These organs have an external, superficial similarity because they do a similar job, but they are different anatomically.

NoteDefinition

(Analogous organs — organs that perform a similar function and look superficially alike, but differ in their basic structure and embryonic origin, and are not inherited from a common ancestor.)

For example, the wings of a butterfly (an insect) and the wings of a bird look superficially alike, but they are not anatomically similar structures, even though they perform a similar function (Fig. 5.13). The bird’s wing is supported by bones — humerus, radius and ulna — and covered with feathers, while the insect’s wing has no bones at all; it is a fold of the body wall.

Diagram

Fig. 5.13 – Analogous organs: the fore wing and hind wing of an insect (no internal bones) shown beside the wing of a bird with humerus, radius, ulna and feathers labelled

Other examples of analogous organs:

  1. The eye of the octopus (Mollusca) and of mammals. They differ in the position of the retina, the structure of the lens, and the origin of the different eye parts.
  2. The flippers of penguins (birds) and of dolphins (mammals).
  3. The sweet potato (a root modification) and the potato (a stem modification) — both store food in the form of starch, but they are modifications of entirely different organs.
  4. The terminal leaflets of pea and the apical bud in Vitis, both modified into tendrils.

Analogous organs lead to convergent evolution — that is, different organisms come to show the same superficial structural similarities because they face similar functions or similar habitats. Selection, working on unrelated ancestors, arrives at similar solutions to the same problem, since the laws of physics leave only so many ways of flying or of swimming.

These organs do not help to trace common ancestry. Thus, analogous organs do not have a significant role as evidence in evolution.

Homologous vs Analogous organs | Feature | Homologous organs | Analogous organs | |—|—|—| | Basic structure | Similar | Dissimilar | | Function | Different | Similar | | Embryonic origin | Same | Different | | Ancestry | Common ancestor | No common ancestor | | Type of evolution shown | Divergent evolution (adaptive radiation) | Convergent evolution | | Value as evidence | Establishes common ancestry | Does not indicate ancestry | | Example | Forelimbs of whale, bat, horse and man; thorn of Bougainvillea and tendril of Cucurbita | Wings of insect and bird; flippers of penguin and dolphin; sweet potato and potato |

Homologous vs Analogous — the exam trap (Ask “same structure or same function?” Same structure, different function → homologous → common ancestry → divergent evolution. Same function, different structure → analogous → no common ancestry → convergent evolution. The wings of a bat and a bird are analogous as wings, but the underlying bones are homologous as forelimbs — this is why examiners phrase the question carefully, and why you must read it carefully.)

c. Vestigial Organs (Rudimentary Organs)

Vestigial organs are imperfectly developed, non-functional, degenerate structures which were functional in some related animals, or in the ancestors of the organism. The vestigial organs are no longer required by the organism, but they indicate its relationship with those organisms in which the same organs are fully developed.

NoteDefinition

(Vestigial organ — a reduced, degenerate and non-functional structure in an organism, which is well developed and functional in its ancestors or in related organisms.)

Vestigial organs are awkward for any theory except evolution. Why should a body contain a useless structure at all? The answer is that it is a leftover — an organ that was useful to an ancestor and has not yet been fully lost.

Examples: Human beings show several vestigial organs (Fig. 5.14):

  1. The presence of the vestigial nictitating membrane — the plica semilunaris, the small fold at the inner corner of the eye. In many other vertebrates this is a full third eyelid that sweeps across the eye.
  2. The presence of wisdom teeth (third molars), which our ancestors, chewing coarse raw plant food, needed and used.
  3. The coccyx (tail bone), which is greatly reduced in man, since a tail is of no use because of our erect posture.
  4. The vermiform appendix and the caecum. These are functional in herbivorous mammals, where they house microbes that digest cellulose. In man, because of the eating of cooked food, the structure has lost its function.

Diagram

Fig. 5.14 – Vestigial organs in man: (1) plica semilunaris at the corner of the eye; (2) the third molar or wisdom tooth in the jaw, with the canine marked; (3) the sacrum and the coccyx (fused tail vertebrae); (4) the caecum and vermiform appendix at the junction of the small intestine and the colon

The presence of these vestigial organs provides evidence that man has evolved, or descended, from simpler primates.

Q. If the appendix is useless, why has natural selection not removed it completely?

A. Because selection only removes a structure if having it is actually harmful enough to reduce reproduction. A small, mostly useless appendix costs little. Vestigial organs are not proof that evolution is inefficient — they are proof that evolution has no foresight, and can only reduce what it inherits, slowly, and only when there is a reason to.

Embryological Evidences

Comparative embryology adds a further line of evidence. The early embryos of very different vertebrates — a fish, a bird, and a mammal — resemble one another far more closely than the adults do. At an early stage, all of them possess features such as a tail and gill clefts, structures that the fish keeps and uses, while the bird and the mammal go on to lose or remodel them.

The point is not that a human embryo passes through a “fish stage”. It is that development starts from an inherited plan shared with distant relatives, and is then modified. Similarity of embryos therefore points to the same conclusion as similarity of bones: common ancestry.

D. Molecular Evidences

The deepest evidence of all lies not in bones but in molecules — because the same molecular machinery is found in every living thing, from a bacterium to a blue whale.

  1. The cell is the basic structural and functional unit of life in all organisms.
  2. Similarities in the proteins and genetic material performing a similar function among diverse organisms give evidence of a common ancestry.
  3. Basic metabolic activities also occur in a similar manner in all organisms.
  4. ATP is the energy currency, and the energy source, in all living organisms.

Consider what point 2 really means. The genetic code — which triplet of bases stands for which amino acid — is virtually the same in a bacterium, a mango tree and a human being. There is no chemical necessity for this. It is common only because all of them inherited it from the same ancestral population of cells.

This shared molecular machinery is the very foundation of biotechnology. The human gene for insulin can be inserted into Escherichia coli, and the bacterium reads it, translates it, and manufactures human insulin — which is how insulin for diabetic patients is now produced. A bacterium can only read a human gene because both are using the same genetic code, inherited from a common ancestor. Every vial of recombinant insulin is, in effect, an experiment confirming common ancestry.

the four lines of evidence (“PMEM” — Palaeontology, Morphology, Embryology, Molecular biology. Fossils in the rock, bones in the body, embryos in the egg, and molecules in the cell — four independent witnesses, one verdict.)

5.11 Speciation

The process of formation of a new species from a pre-existing species is called speciation. It is the end point towards which everything in this chapter has been building: variation, selection and isolation acting together, until one kind of organism has become two.

NoteDefinition

(Speciation — the process by which a new species is formed from a pre-existing species.)

Before we can speak of a new species, we must be clear about what a species is. A species is a group of similar organisms that can interbreed and produce fertile offspring in nature.

NoteDefinition

(Species — a group of similar organisms capable of interbreeding among themselves and producing fertile offspring under natural conditions.)

Two words in that definition do the real work. Interbreed tells us that the members share a single gene pool. Fertile tells us that the gene pool must continue into the next generation — which is why the mule, healthy but sterile, is not a new species. Speciation, then, is nothing other than the permanent splitting of one gene pool into two.

New species are formed by the following modes, shown in FC 5.10.

Flowchart

FC 5.10 – Modes of speciation: Speciation → branch a: Intraspecific speciation (within one species) → (i) Allopatric speciation — geographical barrier separates the population → separate gene pools → new species; (ii) Sympatric speciation — no geographical barrier, reproductive isolation within the same area → new species; branch b: Interspecific speciation → Hybridisation — two different species cross → hybrid → doubling of chromosomes → new fertile species

a. Intraspecific Speciation

Here the new species arises from within a single existing species.

i. Allopatric Speciation

Allopatric speciation is the formation of a new species due to the separation of a segment of a population from its original population — either by sheer distance, or by a geographical barrier cutting across the species range. Examples of such barriers are creeping glaciers and the development of mountains. Migration of individuals to a distant area also causes allopatric speciation.

The mode of evolution here is called adaptive radiation, which you met in Section 5.9. The separated segment, cut off from gene flow, accumulates its own mutations and is shaped by its own environment, until it can no longer interbreed with the parent population.

Examples: the 14 different species of finches in the Galapagos Islands, and the several marsupial species of the Australian continent.

ii. Sympatric Speciation

Sympatric speciation is the formation of new species within a single population, without any geographical isolation. The two groups live side by side, in the same place — and yet they split.

Such species are formed due to reproductive isolation. Some biological barrier — a difference in breeding season, in mating behaviour, or in the genetic material itself — arises within the population and stops the two groups from interbreeding, even though nothing physical separates them. Mutations are helpful in sympatric speciation, because a single chromosomal change can make a group instantly unable to breed with its neighbours.

Example: the Cichlid fishes in Lake Victoria, where a great number of species have arisen within one lake.

Allopatric vs Sympatric speciation | Feature | Allopatric speciation | Sympatric speciation | |—|—|—| | Geographical barrier | Present — population is physically separated | Absent — groups live in the same area | | Type of isolation | Geographical (physical) isolation | Reproductive isolation | | Gene flow stopped by | Distance, river, mountain, glacier, sea | Biological barriers within the population | | Role of mutation | Accumulates separately in the separated groups | Directly helpful; can cause instant isolation | | Example | 14 species of Galapagos finches; Australian marsupials | Cichlid fishes of Lake Victoria |

Allopatric vs Sympatric (Remember the roots: allo- = other, patria = homeland → the two groups are in different places. Sym- = together → the two groups are in the same place. Everything else follows from that one difference.)

Q. If two groups are living in the same lake, with nothing to keep them apart, how can they possibly stop interbreeding?

A. Because a barrier need not be made of rock. A group that begins to breed at a different time of year, or that develops a different courtship signal, or whose chromosome number suddenly doubles, is as effectively cut off from its neighbours as if a mountain range had risen between them. The gene flow stops, and once gene flow stops, the two gene pools drift apart.

b. Interspecific Speciation
Hybridisation

Here the new species arises between two existing species.

Two different species, on crossing, may give rise to a hybrid, which on doubling of chromosomes forms a new species.

The doubling step is essential, and the reason takes us back to hybrid sterility. A hybrid between two species usually cannot form gametes, because its chromosomes have no proper homologous partners to pair with during meiosis. But if the entire chromosome set is doubled, every chromosome suddenly has an identical partner. Meiosis can now proceed normally, the hybrid becomes fertile — and, being unable to breed successfully with either parent species, it is a new species at once.

Examples: Triticum aestivum (hexaploid) and Gossypium herbaceum (tetraploid).

This is not a laboratory curiosity — it is the reason you eat bread. Triticum aestivum, the bread wheat grown across the world, is a hexaploid: it carries six sets of chromosomes, arising from hybridisation between wild grasses followed by chromosome doubling. The extra chromosome sets give larger grains and higher yields than any of its diploid ancestors. Much of modern agriculture — wheat, cotton, sugarcane, banana — rests on polyploid species created in exactly this way, some by nature and some, later, by plant breeders imitating her.

Q. Speciation by hybridisation can happen in a single generation. Does this not contradict the idea that evolution is slow and gradual?

A. It shows that evolution has more than one speed. The gradual route — mutation, selection and isolation acting over thousands of generations — is the usual one, especially in animals. But chromosome doubling in plants can produce a reproductively isolated, fertile new species almost at once. Both routes end at the same place: two gene pools where there was one.

speciation (Zoom in: speciation begins as changes in alleles within the gene pool of a population. Zoom out: repeated speciation, over geological time, produces genera, families and the whole branching tree of life — the record of which is read from the fossils in the rocks, as the next section shows.)

5.12 Geological Time Scale

Reading the Calendar of the Earth

The planet earth, with its present biodiversity, was not the same when it was born. The study of fossils tells us that the life forms of millions of years ago (MYA) were not like today’s at all.

The geological time scale is used to understand the sequence of events that took place on the earth in different ages, over a long period of time. It is, in effect, the calendar of life — a way of putting every fossil, every extinction and every new group in its proper place in time.

NoteDefinition

(Geological time scale — the time chart of the earth’s history, divided into eras, periods and epochs, showing the sequence of geological and biological events over millions of years.)

The scale is divided into six major ‘Eras’. Eras ended with major environmental changes on earth, which resulted in the extinction of some species and the emergence of new ones. That is precisely why the boundaries fall where they do: an era ends when the living world is largely replaced. The eras are further divided into periods and epochs, based on minor but landmark events within each era. Table 5.15 shows the geological time scale at a glance, and Fig. 5.16 presents the same history as a pie diagram.

Flowchart

FC 5.11 – Divisions of the geological time scale: Geological time scale → Era (ends with a major environmental change and mass extinction) → Period (a smaller division within an era) → Epoch (the smallest division, based on landmark events)

How the Age of a Fossil Is Found

One question must be answered before the table can mean anything: how do we know that a rock is 65 million years old rather than 65 thousand?

The layers themselves give the order of events — deeper means older — but not the actual age in years. The age is obtained by radiometric dating. Certain elements in the rock are radioactive, and they decay into other elements at a fixed, unchanging rate. By measuring how much of the parent element is left, and how much of the daughter element has accumulated, the time elapsed since the rock formed can be calculated.

For relatively recent remains — up to a few tens of thousands of years — carbon dating is used. While an organism is alive, it keeps taking in carbon, including a small, steady proportion of the radioactive isotope carbon-14. Once it dies, intake stops, and the carbon-14 already in the body begins to decay at a known rate. Measuring how much is left therefore tells us how long ago the organism died. For older fossils, carbon-14 has decayed almost entirely, and slower-decaying elements in the surrounding rock must be used instead.

Q. Why can carbon dating not be used to find the age of a dinosaur fossil?

A. Because carbon-14 decays relatively quickly. After a few tens of thousands of years, so little is left that it cannot be measured reliably. A dinosaur fossil is tens of millions of years old, so the age of the surrounding rock must be found using slower-decaying radioactive elements instead.

Q3. How do scientists know that a fish like the coelacanth was “extinct for millions of years”? What tells us the age of life on Earth?

A. From fossils in dated rock. Coelacanth fossils were found in sedimentary layers whose age had been fixed by radiometric dating, and none were found in any layer above a certain level — so the group was assumed to have died out at that point. This is also how the whole history of life is dated: the order of the layers gives the sequence of events, and radioactive decay gives the actual number of years. The coelacanth’s reappearance is a reminder of an important limitation — an absence of fossils shows only that an organism has not been found in the later rocks, not that it certainly did not exist.

The Story the Table Tells

The first life appeared on the earth some 2000 million years ago. It took billions of years for this to happen, and the transition from protenoids to the first cells is still a mystery.

Once formed, the living forms diversified into various groups. Life began in the sea water, and plants were the first living beings to adapt to terrestrial life. This order makes sense: land is a hostile place — dry, exposed to radiation, offering no support against gravity — and any organism moving on to it must first solve those problems. Plants, which need only light and water, solved them first, and in doing so they created the food supply that later allowed animals to follow.

Fishes evolved and diversified. The lobefin group of fishes also diversified. Some of them developed stout and strong fins, with which they could go on to land and come back to water.

The coelacanth was long considered a living fossil. Lobefins were thought to be extinct, but a variety of lobefin fish, the coelacanth, was caught in 1938 in South Africa — the discovery with which this chapter opened.

Reptiles evolved from amphibians. They were the first true land vertebrates, because they do not have to go back to water for reproduction. (Compare an amphibian’s egg, a soft mass of jelly that would dry out instantly on land, with a reptile’s shelled egg, which carries its own water supply inside it. That single innovation set the vertebrates free from the water’s edge.)

But about 200 million years ago (mya), some reptiles moved back to an aquatic mode of life and gained a fish-like form, as seen in Ichthyosaurs. The giant reptiles, the Dinosaurs, once dominated the earth, but are now extinct — around 65 million years ago. At around the same time, giant ferns that were present on earth also became extinct, and were converted into fossil fuels.

Q. Ichthyosaurs looked like fish and lived in the sea. Does this not mean evolution reversed itself?

A. No. Their fish-like shape is a case of convergent evolution — the same physical problem of moving through water produced the same streamlined solution. But an ichthyosaur remained a reptile: it breathed air with lungs and did not develop gills. Evolution is irreversible; what returns to an old habitat brings its new body with it.

The decline of the giant reptiles marked the beginning of the dominance of mammals. These viviparous organisms were more intelligent, and could avoid danger. Early mammals were small, shrew-like organisms, but this group diversified remarkably: whales, dolphins, seals and sea cows live in water; bats are the flying mammals; kangaroo rats are fossorial (burrowing); and lemurs are arboreal (tree-dwelling).

Notice that this is adaptive radiation once again, this time on the grandest scale — one small shrew-like ancestor giving rise to swimmers, fliers, burrowers and climbers, because the extinction of the dinosaurs had emptied every way of life at once.

Continental Drift and Its Consequences

Major physical disturbances of the earth led to the phenomenon of continental drift — that is, the continents moved from their original positions.

The biological consequences were dramatic. When South America joined North America, the ancestral forms of horse, hippos, rabbits and other animals native to South America were dominated by the North American animals that now poured across the new land bridge. Two faunas that had evolved separately were suddenly forced to compete, and one lost.

At the same time, marsupials in Australia diversified into different habitats. These survived precisely because of the lack of competition — Australia remained isolated, and no placental mammals arrived to displace them. The same isolation that permits adaptive radiation is what allowed the marsupials to keep the continent to themselves.

From the fossil records, we can trace the complete evolutionary history of the horse, the elephant, the dog, and other animals. Human beings are the most evolved animals on the earth.

Diagram

Fig. 5.16 – Geological time scale pie diagram: a circular chart of the earth’s 4.6-billion-year history with the eons Hadean, Archean, Proterozoic and Phanerozoic (Palaeozoic, Mesozoic, Cenozoic) marked as coloured arcs, and key events labelled — 4550 Ma formation of the Earth, 4527 Ma formation of the Moon, c. 4000 Ma end of the Late Heavy Bombardment and first life, c. 3200 Ma earliest photosynthesis, c. 2300 Ma atmosphere becomes oxygen-rich and first Snowball Earth, 750–635 Ma two Snowball Earths, c. 530 Ma Cambrian explosion, c. 380 Ma first vertebrate land animals, 230–66 Ma non-avian dinosaurs, 2 Ma first hominins

Table 5.15: Geological Time Scale
Era Period Time (MYA) Epoch Plant life Animal life
Cenozoic Quaternary 0.01–0.6 Recent (Holocene) Angiosperms, dicots, monocots; spread of agriculture Age of mammals: development of modern man, birds, fishes and insects; development of human culture
Cenozoic Quaternary 0.6–2.0 Pleistocene Increase in herbs Extinction of the great mammals; appearance of primitive man
Cenozoic Tertiary 2–13 Pliocene Hard woody plants, conifers, bryophytes, monocots; grasslands dominated Emergence or origin of man; evolution of ruminants — horse, camel, elephant
Cenozoic Tertiary 13–26 Miocene Abundance of deciduous trees; origin of grasses Formation of the first man-like apes; adaptive radiation or spread of mammals
Cenozoic Tertiary 26–38 Oligocene Rise of monocots and flowering plants Extinction of archaic mammals; appearance of apes and monkeys; turtles and crocodiles attained development
Cenozoic Tertiary 38–54 Eocene Development of angiosperms Diversification of placental mammals and modern birds
Cenozoic Tertiary 54–65 Palaeocene Advancement of flowering plants Arrival of the early or first primates; rise of placental mammals
Mesozoic Cretaceous 65–135 — Decline of ferns, sphenopsids (horsetails) and Bennettitales; Ginkgos, Gnetales; first appearance of flowering plants Extinction of dinosaurs and toothed birds; appearance of placental mammals and the first modern birds
Mesozoic Jurassic 135–165 — Origin of angiosperms; dominance of herbaceous lycopods, ferns, conifers, cycads Age of reptiles; dinosaurs dominant; appearance of toothed birds (Archaeopteryx); rise of marsupials
Mesozoic Triassic 165–225 — Dominance of Bennettitales, gymnosperms; extinction of seed ferns Appearance and rise of dinosaurs; extinction of primitive amphibians; diversification of reptiles; rise of oviparous mammals; therapsids; diversification of flies
Palaeozoic Permian 225–280 — Origin of conifers; decline of arborescent lycopods; abundance of ferns, cycads and advanced conifers Rise of modern insects; disappearance of trilobites; appearance of mammal-like reptiles (pelycosaurs); decline of amphibians
Palaeozoic Carboniferous 280–345 — Development of diverse arborescent lycopods, mosses, seed ferns and primitive conifers; age of ferns and coal forests; different fungal groups Abundance of amphibians (age of amphibians); appearance of reptiles and winged insects
Palaeozoic Devonian 345–400 — Appearance of the first progymnosperms; formation of forests; wood-decaying fungi, chytrids; origin of bryophytes Diversification of fishes; evolution of amphibians; appearance of ammonites
Palaeozoic Silurian 400–440 — Appearance of lycopods and ferns; dominance of algae and ascomycete fungi Appearance of the first terrestrial animals, wingless insects and jawed fish
Palaeozoic Ordovician 440–500 — Appearance of the first seedless vascular land plants; abundant algae Abundance of diverse invertebrates; appearance of the first vertebrates — jawless fishes; appearance of corals and giant cephalopods like Nautilus
Palaeozoic Cambrian 500–590 — Rhynia-like plants; all types of marine algae Abundance, or age, of trilobites; diversification of invertebrate phyla
Proterozoic — 600–1600 — Tracheophyte ancestors, chlorophyte ancestors, bacterial single-celled protista, blue-green algae Primitive flatworms, annelids, sponges, coelenterates, primitive metazoans; scanty fossils of prokaryotes
Archaeozoic — 1600–3800 — No fossil records Origin of life; simple unicellular forms like viruses, bacteria and algae
Azoic — 3800–4600 — No life Absence of living beings; chemical evolution; formation of the earth

(MYA = Million Years Ago)

reading Table 5.15 (Read the table from the bottom upwards, because the bottom rows are the oldest. Three patterns will emerge. First, simple before complex: unicellular forms in the Archaeozoic, invertebrates in the Cambrian, fishes in the Ordovician–Devonian, amphibians in the Carboniferous, reptiles in the Permian, mammals and birds in the Mesozoic, man in the Quaternary — the order predicted by evolution, and never the reverse. Second, water before land: the first terrestrial animals appear only in the Silurian, long after marine life. Third, every era boundary is a turning point: the extinction of the dinosaurs at the top of the Cretaceous is immediately followed, in the row above, by the diversification of placental mammals. Extinction empties the niches; radiation fills them again.)

the six eras, oldest to newest (Azoic → Archaeozoic → Proterozoic → Palaeozoic → Mesozoic → Cenozoic. The endings tell the story: a-zoic = no life; archaeo-zoic = ancient life; protero-zoic = earlier life; palaeo-zoic = old life; meso-zoic = middle life; ceno-zoic = recent life.)

Era vs Period vs Epoch (An era is the largest division and ends with a major environmental upheaval and mass extinction. A period is a division within an era. An epoch is the smallest division, marked by minor landmark events. Largest to smallest: era → period → epoch.)

the geological time scale (Zoom in: each entry in this table is ultimately a fossil in a rock — a bone, a shell, a leaf impression. Zoom out: the whole table is the record of speciation, adaptive radiation and extinction, operating by the mechanisms of Sections 5.6 and 5.7, over four and a half billion years.)

5.13 Human Evolution

Everything in this chapter — variation, selection, isolation, speciation, the slow filling of the geological time scale — applies to our own species as much as to any other. This last section traces that story.

From a Shrew-like Ancestor

It has been traced that human evolution appeared to have begun from a tree-dwelling, shrew-like animal. This process began in the Palaeocene epoch.

During this period, the forests were dwindling. Arboreal mammals that had spent their lives in the branches were forced to adapt to life on the ground. This descent from the trees must have been the driving force of everything that followed — because an animal that lives on the ground, and no longer needs its forelimbs to grip branches, has its hands free for something else.

Where We Sit Among the Mammals

Our position in the classification of mammals is shown in Chart 5.17, and it can be traced step by step in FC 5.12. Read it carefully, and you will see that we are most closely related to the gibbons, chimpanzees and gorillas.

Flowchart

FC 5.12 – Classification of mammals (Chart 5.17): Class Mammalia → branches into Marsupials (pouched mammals), Monotremes (egg-laying mammals) and Eutherians (placental mammals) → Eutherians → Order Primate → branches into Sub-order Prosimii (Lemurs, Tarsier) and Sub-order Anthropoidea → Anthropoidea branches into New World monkeys (long non-prehensile tail; e.g. squirrel monkey, spider monkey), Old World monkeys (short non-prehensile tail; e.g. baboons, macaques, langur) and Hominoidea (tailless great apes) → Hominoidea branches into Hyalobatidae (arboreal apes, gibbons), Pongidae (semi-arboreal apes — gorilla, chimpanzee, orangutan) and Hominidae (erect posture — human beings)

Notice the two dividing lines within this chart. Monkeys have tails; the Hominoidea do not. Among the Hominoidea, the Pongidae are still apes of the trees and the forest floor, while the Hominidae are set apart by one thing above all — erect posture.

Do you know? There is a difference of only 2.5 % between the DNA of a chimpanzee and that of man, while between a monkey and man the difference is 10 %.

Q. What does a 2.5 % DNA difference between chimpanzee and man actually tell us?

A. It is molecular evidence of relatedness. The smaller the difference in DNA, the more recently two species shared a common ancestor. A 2.5 % difference from the chimpanzee against a 10 % difference from the monkey means our lineage separated from the chimpanzee’s much more recently than from the monkey’s — exactly the branching order shown in Chart 5.17, arrived at independently by anatomy.

Fossil Ancestors of Man

The evolutionary history of man was traced with the help of fossil remains found over a period of time. Some of our ancestors, and their evolutionary history, are shown in Table 5.18. The overall sequence is illustrated in Fig. 5.19.

Diagram

Fig. 5.19 – Human Evolution: a series of six figures walking from left to right, progressing from a stooped, ape-like, knuckle-walking form through increasingly upright intermediate forms to a fully erect modern man; show the gradual straightening of the back, shortening of the arms and enlargement of the skull

Table 5.18: Human Evolution
Heads Dryopithecus Ramapithecus Australopithecus Homo habilis Homo erectus Neanderthal man Homo sapiens
Appearance Ape-like Man-like Connecting link between ape and man Handy-man like Ape man Advanced prehistoric man Modern man
Site of fossil record Lake Victoria of Africa; Haritalyangar of Himachal Pradesh Shivalik Hills in India, and also in Kenya Taung in South Africa; Ethiopia; Tanzania Olduvai Gorge, Tanzania, in Africa Java and Peking Neanderthal valley, Germany Africa
Period Miocene epoch, 20–25 mya Miocene and early Pliocene epoch, 14–12 mya Late Pliocene or early Pleistocene epoch, about 4–1.8 mya Late Pliocene or early Pleistocene, 2.5 to 1.4 mya Middle of the Pleistocene epoch, 1.5 mya Late Pleistocene epoch, 100000 to 40000 years ago —
Skeletal features — Lower jaw lightly built; dentition more like modern man; smaller molars Not taller than 4 feet; jaws larger; prognathous face; chin absent; lumbar curvature present — 5 feet in height; prognathous face; massive jaws; huge teeth; chin absent; bony eyebrow ridges present Heavily built and short; prominent brow ridges; low forehead; deep jaws; chin absent; outwardly curved thigh bones —
Posture Semi-erect Erect Upright Erect Erect Erect Erect
Cranial capacity — — 450 to 600 cc 650 to 800 cc 900 cc 1400 cc 1450 cc
Special features, if any Close similarity to the chimpanzee Man with an ape brain Probably did not eat meat Made tools from stones; nicknamed ‘handy man’ Probably ate meat; omnivorous; might have used fire Used hide; buried their dead; constructed flint tools Developed distinct races; developed cave art about 18000 years ago

The table clearly shows the gradual increase in cranial capacity, and the changes in the shape of the skull and in the dentition of our ancestral humans, right up to the present day.

reading the cranial capacity row of Table 5.18 (Take just one row — cranial capacity — and read it from left to right: 450–600 cc → 650–800 cc → 900 cc → 1400 cc → 1450 cc. Two things stand out. The trend is steady and one-directional, which is the signature of directional selection (Section 5.7) acting on brain size over about four million years. The rise is not smooth — the jump from Homo erectus (900 cc) to Neanderthal man (1400 cc) is far larger than the final step to Homo sapiens (1450 cc), suggesting that most of the enlargement was already complete before modern humans appeared. Note also that the Neanderthal’s cranial capacity is not much smaller than ours — brain size alone does not tell the whole story.)

the sequence of human ancestors (“Dry Rama Aus Habilis Erectus Neander Sapiens” — Dryopithecus → Ramapithecus → Australopithecus → Homo habilis → Homo erectus → Neanderthal man → Homo sapiens. Reading the same order in the table gives you posture rising from semi-erect to erect, and cranial capacity rising from 450 cc to 1450 cc.)

Ramapithecus vs Australopithecus (Ramapithecus is described as man-like — a man with an ape brain — and is known chiefly from jaw and tooth fossils found in the Shivalik Hills. Australopithecus is described as the connecting link between ape and man, stood upright, was not taller than 4 feet, and had a cranial capacity of 450–600 cc.)

Some of the most important fossil evidence for human evolution comes from the Indian subcontinent. Ramapithecus was named from fossils recovered in the Shivalik Hills, and Dryopithecus fossils have been found at Haritalyangar in Himachal Pradesh. Our own region is not merely a spectator in the story of human origins — it holds part of the record.

Human beings are said to be the most evolved and most intelligent living beings. And yet we are not self-sufficient. List the ways in which we depend on other living organisms for our survival — for food, for oxygen, for medicines, for soil fertility — and then consider whether “most evolved” is really the same thing as “independent of other life”.

human evolution (Zoom in: the changes traced here — a taller forehead, an opposable thumb, a broader pelvis — began as alterations in genes and in gene frequencies within small populations. Zoom out: the same processes are still operating on us today. Our journey of evolution still continues.)

5.14 Summary

Origin of life

  1. Living matter shows responsiveness, growth, metabolism, energy transformations and reproduction. How such matter first appeared is still an unsolved question.
  2. Four early theories were proposed. The theory of special creation (life created by a super-natural power) has no scientific proof. The cosmozoic theory (panspermia) holds that life reached the earth from other planets as spores; it cannot explain how life began on those planets, and is not accepted.
  3. The theory of spontaneous generation (abiogenesis) claimed that life arises from non-living matter on its own. It was disproved by Louis Pasteur.
  4. The theory of biogenesis states that living organisms arise only from pre-existing living forms, by reproduction. It explains the continuity of life, but not the origin of the first life.

Chemical evolution

  1. According to the chemical evolution (self assembly) theory, life arose on earth by the combination of chemicals over a long time. It was formulated by Haeckel and developed by Oparin (1924) and Haldane (1929).
  2. The steps were: origin of the earth and its primitive reducing atmosphere, devoid of free oxygen → formation of \(CH_4\), \(NH_3\), \(H_2O\) and \(H_2S\) → formation of simple organic molecules (monosaccharides, amino acids, purines, pyrimidines, fatty acids, glycerol) which accumulated as Haldane’s “hot dilute soup” → polymerisation into complex molecules (polysaccharides, fats, proteins, nucleotides) → formation of nucleic acids with self-replicating ability → formation of protobionts (Oparin’s coacervates, Sidney Fox’s microspheres), which became eobionts or protocells → formation of the first cell, which was anaerobic and heterotrophic.
  3. Urey and Miller provided the first experimental support. In a sterilized, evacuated spark-discharge apparatus they exposed \(CH_4\), \(NH_3\) and \(H_2\) in the proportion 1:2:2, along with water vapour, to an electric discharge for several days, and obtained urea, amino acids and lactic acid.
  4. The RNA World hypothesis (Carl Woese, Francis Crick and Leslie Orgel, 1960) suggests the first life was based on RNA. It was strongly supported when Sidney Altman and Thomas Cech showed in 1980 that RNA can act as a biocatalyst (ribozyme); they received the Nobel Prize in Chemistry in 1989.

Theories of evolution

  1. Organic evolution is the slow, gradual, continuous and irreversible change by which complex present-day life forms developed from simple pre-existing forms. Darwin called it ‘descent with modification’.
  2. Lamarck’s theory of inheritance of acquired characters held that characters acquired during life, through use and disuse, are inherited. August Weismann disproved it by cutting the tails of rats for 21 generations with no effect, and proposed the theory of continuity of germplasm — only germ-cell (germplasm) changes are inherited, not body-cell (somatoplasm) changes.
  3. Darwinism (On the Origin of Species, 1859) rests on five postulates: overproduction, struggle for existence, organic variations, natural selection (Spencer’s ‘survival of the fittest’), and origin of new species. Its evidences include the long-necked giraffe, black peppered moths, and DDT resistance in mosquitoes.
  4. Darwinism’s chief drawbacks: it could not distinguish hereditary from environmental (or somatic from germinal) variations, could not explain the ‘arrival of the fittest’, the origin of variations, vestigial organs, extinction, neutral flowers or hybrid sterility.
  5. Mutation theory (Hugo de Vries, 1901), based on the evening primrose (Oenothera lamarckiana), states that mutations are large, sudden, random, discontinuous and heritable variations, which provide the raw material for evolution. Objections: de Vries’ variations were really chromosomal aberrations; the mutation rate is too low; chromosomal aberrations are unstable. A single-step large mutation is called saltation.

Modern synthetic theory

  1. It combines all biological disciplines and gives importance to both mutation and natural selection. A small interbreeding group is a Mendelian population; the sum of its genes is the gene pool; the proportion of an allele at a locus is the gene frequency. Populations evolve, not individuals.
  2. Its three concepts are genetic variations, natural selection and isolation.
  3. Genetic variations arise from gene mutation, genetic recombination (crossing over between non-sister chromatids of homologous chromosomes), gene flow, genetic drift, and chromosomal aberrations — deletion, duplication, inversion (\(180^\circ\) twist, no loss or gain of genes) and translocation (transfer to a non-homologous chromosome).
  4. Industrial melanism in Great Britain is a classic case of natural selection: before industrialization (1845) the grey-white Biston betularia outnumbered the black Biston carbonaria; soot killed the lichens and blackened the trunks, and the black form then had the advantage.
  5. Isolation prevents interbreeding. It is geographical (physical) — e.g. Darwin’s finches — or reproductive. Isolating mechanisms are pre-mating (pre-zygotic) — habitat, seasonal, ethological, mechanical — or post-mating (post-zygotic) — gamete mortality, zygote mortality, hybrid sterility (e.g. the sterile mule).

Mechanism of evolution

  1. The basic processes are mutation, gene recombination, gene flow, genetic drift, natural selection, isolation and speciation.
  2. Genetic drift is random change in allele frequency by chance (the Sewall Wright effect); it matters most in small populations. The founder effect occurs when a few individuals establish a new population; the bottleneck effect occurs when most of a population is destroyed by a disaster.
  3. Natural selection is of three types: stabilizing (favours the mean, reduces variation, no evolutionary change — e.g. intermediate infant birth weight), directional (favours one extreme, shifts the peak — e.g. industrial melanism, DDT-resistant mosquitoes), and disruptive (favours both extremes, eliminates intermediates, produces two peaks — e.g. beak size in African seed-cracker finches; this type is rare).

Hardy–Weinberg principle

  1. At equilibrium, allele and genotypic frequencies remain constant from generation to generation, provided the population is diploid, sexually reproducing, large, freely interbreeding, randomly mating, and free from selection or any other factor that changes allele frequency.
  2. \(p + q = 1\) and \((p+q)^2 = 1\), giving \(p^2 + 2pq + q^2 = 1\), where \(AA = p^2\), \(Aa = 2pq\) and \(aa = q^2\). Also \(AA + 2Aa + aa = 1\).
  3. Gene migration, genetic drift, mutation, recombination, natural selection and non-random mating disturb the equilibrium. If none of these operates, the population is genetically stable and non-evolving.

Adaptive radiation and speciation

  1. Adaptive radiation is the transformation of one original species into many different varieties — e.g. Darwin’s finches of the Galapagos and the Australian marsupials.
  2. Speciation is the formation of a new species from a pre-existing one. A species is a group of similar organisms that interbreed and produce fertile offspring in nature.
  3. Intraspecific speciation is of two types: allopatric (separation by distance or a geographical barrier; e.g. 14 finch species of the Galapagos) and sympatric (no geographical barrier; caused by reproductive isolation; e.g. Cichlid fishes of Lake Victoria).
  4. Interspecific speciation occurs by hybridisation: two species cross, and doubling of chromosomes makes the hybrid a new fertile species — e.g. Triticum aestivum (hexaploid) and Gossypium herbaceum (tetraploid).

Evidences of organic evolution

  1. Palaeontology: fossils give the most convincing and direct evidence. Fossils form in sedimentary rock, amber, ice and peat bogs; primitive forms lie in older, lower layers and advanced forms in upper, recent layers. Types: actual remains (Wooly Mammoth of Siberia), moulds (footprints), casts, and compressions.
  2. A connecting (missing) link shows characters of two groups — Seymouria (amphibians–reptiles) and Archaeopteryx (reptiles–birds). Archaeopteryx lithographica, a crow-sized toothed bird from the Jurassic rocks of Germany, had reptilian characters (long tail, scales, clawed digits, homodont teeth, keel-less sternum, solid bones) and avian characters (feathers, wings, beak, fused skull). Huxley called birds ‘glorified reptiles’.
  3. Morphology and anatomy: homologous organs are structurally similar but functionally different (forelimbs of lizard, bird, bat, horse, whale and man; thorn of Bougainvillea and tendril of Cucurbita) and indicate common ancestry and divergent evolution. Analogous organs are structurally dissimilar but functionally similar (wings of insect and bird; flippers of penguin and dolphin) and indicate convergent evolution; they do not trace ancestry. Vestigial organs are degenerate, non-functional structures — in man, the plica semilunaris, wisdom teeth, coccyx, and the vermiform appendix with the caecum.
  4. Molecular evidences: the cell as the basic unit of all life; similar proteins and genetic material; similar basic metabolic activities; ATP as the energy source in all organisms.

Geological time scale and human evolution

  1. The scale is divided into six eras, further divided into periods and epochs. The first life appeared some 2000 million years ago. Life began in sea water; plants adapted to land first; reptiles were the first true land vertebrates; dinosaurs became extinct around 65 million years ago, after which mammals became dominant. Continental drift reshaped the distribution of animals, and Australian marsupials survived through lack of competition.
  2. Human evolution began from a tree-dwelling, shrew-like animal in the Palaeocene epoch. Major trends: increase in brain size and cranial capacity, bipedal locomotion, erect posture, opposable thumb, shortened forelimbs, chin, broadened pelvic girdle, lumbar curvature, and social and cultural development.
  3. The fossil sequence runs Dryopithecus → Ramapithecus → Australopithecus → Homo habilis → Homo erectus → Neanderthal man → Homo sapiens, with cranial capacity rising from 450–600 cc in Australopithecus to 1450 cc in Homo sapiens.

Flowchart

FC 5.13 – The chapter in one chain: Non-living chemicals (\(CH_4\), \(NH_3\), \(H_2O\), \(H_2S\)) → simple organic molecules → complex organic molecules → nucleic acids → protobionts → first cell → mutation and recombination create variation → gene flow and genetic drift shift allele frequencies → natural selection favours the fit → isolation stops gene flow → speciation → adaptive radiation → the diversity recorded in the geological time scale → human evolution → (the process continues)

5.15 Points to Ponder

  1. Pasteur showed that life does not arise from non-living matter. Chemical evolution claims that, once upon a time, it did. Are these two statements really in conflict — or does everything depend on the conditions? What exactly was different about the early earth?

  2. If the first cell was anaerobic and heterotrophic, it fed on the organic molecules already lying in the primitive broth. What must have happened to life once that free supply began to run out?

  3. Free oxygen would have destroyed the fragile organic molecules from which life was assembled. Yet today most organisms cannot live without oxygen. How did a gas that would have prevented life from beginning become the gas on which life depends?

  4. Why is the human brain capable of what it is? Why did we evolve along these lines and not some other? And what is the true extent of the similarity between humans, chimpanzees and monkeys?

  5. The cranium of an elephant is larger than that of a human being. On what grounds, then, do we call ourselves the more intelligent species — and is “intelligence” a single thing that can be ranked at all?

  6. Human beings are said to be the most evolved and most intelligent living beings. Yet we are not self-sufficient. Think of all the ways in which our survival depends on other living organisms. Does “most evolved” really mean “most independent”?

  7. Darwin could explain the survival of the fittest, but not the arrival of the fittest. Which later idea filled that gap — and is the gap now completely closed?

  8. Natural selection can only choose among variations that already exist; it cannot create the variation it needs. What does this tell you about the limits of what evolution can produce?

  9. Genetic drift can eliminate a useful allele purely by chance. Does this mean that evolution does not always produce better-adapted organisms?

  10. The Hardy–Weinberg principle describes a population in which nothing changes. Does any real population in nature actually satisfy all its conditions? If not, of what use is the principle?

  11. A mule is strong, healthy and long-lived, yet it is an evolutionary dead end. What does this tell you about how biologists define “fitness”?

  12. The dinosaurs disappeared around 65 million years ago, and so did the giant ferns. Can we give an affirmative reason for these extinctions? What conditions could have destroyed both a group of huge reptiles and a group of large plants at roughly the same time?

  13. The coelacanth was declared extinct on the evidence of the fossil record, and then turned up alive. What does this tell us about the difference between “no fossils found” and “did not exist”?

  14. Vestigial organs are useless to their owner. Why has natural selection not removed them entirely? What would have to be true for an organ to be lost completely?

  15. Marsupials survived in Australia because there was no competition from placental mammals. What is likely to happen to such a fauna when humans introduce new species to the continent?

  16. Fossil parks and rock shelters preserve the record of life and of early human culture — the Wadadham fossil park in Gadchiroli district of Maharashtra, and the cave paintings of prehistoric humans at the Bhimbetka rock shelter in Raisen district, Madhya Pradesh. Why should a country invest in protecting such sites? What would be lost if they were destroyed?

  17. Our journey of evolution still continues. In what ways might natural selection be acting on human populations today — and in what ways have medicine, technology and culture changed the rules?

5.16 Objective Questions

  1. Who proposed that the first form of life could have come from pre-existing non-living organic molecules?
    1. Alfred Wallace
    2. Oparin and Haldane
    3. Charles Darwin
    4. Louis Pasteur
  2. The sequence of origin of life may be —
    1. Organic materials – inorganic materials – eobiont – colloidal aggregates – cell
    2. Inorganic materials – organic materials – colloidal aggregates – eobiont – cell
    3. Organic materials – inorganic materials – colloidal aggregates – cell
    4. Inorganic materials – organic materials – eobiont – colloidal aggregates – cell
  3. In the Hardy–Weinberg equation, the frequency of homozygous recessive individuals is represented by —
    1. \(p^2\)
    2. \(pq\)
    3. \(q^2\)
    4. \(2pq\)
  4. Select the analogous organs.
    1. Forelimbs of whale and bat
    2. Flippers of dolphin and penguin
    3. Thorn and tendril of Bougainvillea and Cucurbita
    4. Vertebrate hearts or brains
  5. Archaeopteryx is known as a missing link because it is a fossil and shares characters of both —
    1. Fishes and amphibians
    2. Annelida and Arthropoda
    3. Birds and reptiles
    4. Chordates and non-chordates
  6. Identify the wrong statement regarding evolution.
    1. Darwin’s variations are small and directional.
    2. Mutations are random and non-directional.
    3. Adaptive radiation leads to divergent evolution.
    4. Mutations are non-random and directional.
  7. Gene frequency in a population remains constant due to —
    1. Mutation
    2. Migration
    3. Random mating
    4. Non-random mating
  8. Which of the following characteristics is NOT shown by the ape?
    1. Prognathous face
    2. Tail is present
    3. Chin is absent
    4. Forelimbs are longer than the hind limbs
  9. ……………… can be considered as the connecting link between ape and man.
    1. Australopithecus
    2. Homo habilis
    3. Homo erectus
    4. Neanderthal man
  10. The cranial capacity of Neanderthal man was —
  1. 600 cc
  2. 940 cc
  3. 1400 cc
  4. 1600 cc
  1. Match the following.
Column I Column II
a. August Weismann i. Mutation theory
b. Hugo de Vries ii. Germplasm theory
c. Charles Darwin iii. Theory of inheritance of acquired characters
d. Lamarck iv. Theory of natural selection
  1. Complete the chart.
Era Dominating group of animals
1. Cenozoic …………………………….
2. ……………….. Reptiles
3. Palaeozoic …………………………….
4. ……………….. Invertebrates

5.17 Check Your Concepts

  1. Pasteur’s swan-necked flask experiment showed that a sterile broth stays free of micro-organisms indefinitely, even though air can reach it. Explain precisely which theory this disproved, and explain why it does NOT disprove the chemical evolution theory of the origin of life.

  2. Assertion: The primitive atmosphere of the earth was of a reducing type. Reason: The absence of free oxygen allowed newly formed organic molecules to accumulate without being degraded. State whether the assertion and the reason are true, and whether the reason correctly explains the assertion.

  3. Arrange the following in the correct sequence of chemical evolution: nucleic acids, simple organic molecules, protobionts, first cell, complex organic molecules, formation of \(CH_4\) and \(NH_3\), eobionts.

  4. In Urey and Miller’s apparatus, why was the chamber first sterilized and evacuated? What error in interpretation would have been possible if this step had been omitted?

  5. Why did the discovery of ribozymes provide such strong support for the RNA World hypothesis? In your answer, explain the “chicken-and-egg” problem that DNA and protein present.

  6. Compare coacervates and microspheres with respect to: the scientist who described them, their composition, their boundary, and their stability.

  7. Weismann cut the tails of rats for 21 generations and found no change in tail length. What theory was he testing, what conclusion did he draw, and which theory did he propose as a result?

  8. A gardener prunes a rose plant every year to give it a particular shape. Will the seeds of this plant produce pruned-looking plants? Justify your answer using the germplasm theory.

  9. Assertion: Overproduction of offspring is essential for natural selection to operate. Reason: Populations of most species remain relatively constant in size from year to year. Explain the connection between the assertion and the reason.

  10. Darwin could explain the “survival of the fittest” but not the “arrival of the fittest”. Explain what this criticism means, and state which later theory attempted to answer it.

  11. “The spraying of DDT did not create resistance in mosquitoes; it only revealed it.” Justify this statement.

  12. Distinguish between Darwin’s variations and de Vries’ mutations on the basis of size, suddenness, direction, and their proposed role in speciation.

  13. What happens to the gene complement of a chromosome in (i) deletion, (ii) duplication, (iii) inversion, and (iv) translocation? For which one is there neither a loss nor a gain of genes, and why?

  14. Crossing over and translocation both involve the exchange of chromosome segments. Why is one a normal event of meiosis and the other an aberration?

  15. Explain why genetic recombination is important for evolution even though it does not create a single new allele.

  16. Why is the effect of genetic drift much more significant in a small population than in a large one? Illustrate your answer with a simple example.

  17. Distinguish between the founder effect and the bottleneck effect. In which one does the original population survive?

  18. Both natural selection and genetic drift change allele frequencies. State the one essential difference between them, and explain why a useful allele can be lost by drift but not by selection.

  19. Before industrialization, why was the black-winged moth rare, and after industrialization, why did it become common? Which type of natural selection does this illustrate, and why?

  20. Three graphs of number of individuals against character value are given. In the first, the peak becomes narrower without shifting; in the second, the peak shifts sideways; in the third, one peak becomes two. Identify each type of selection, and state, for each, which individuals are being eliminated.

  21. Why is disruptive selection the only one of the three types of selection that can split a single population into two distinct forms? Support your answer with the example of the African seed-cracker finches.

  22. A population is in Hardy–Weinberg equilibrium. Explain what would happen to the allele frequencies if (i) the population became very small, (ii) individuals began choosing mates of a particular genotype, and (iii) a group of migrants entered the population.

  23. Why does the middle term of the Hardy–Weinberg equation carry the factor 2? Answer using the Punnett square.

  24. “The forces that break the Hardy–Weinberg equilibrium are exactly the forces that cause evolution.” Explain this statement.

  25. Both Darwin’s finches and the Australian marsupials are cited as examples of adaptive radiation. What do these two cases have in common that made adaptive radiation possible in each?

  26. Two populations of frogs live in the same pond, but one breeds in the early monsoon and the other in the late monsoon, and they never interbreed. Name the isolating mechanism, state whether it is pre-zygotic or post-zygotic, and explain your reasoning.

  27. A mule is healthy and strong, yet sterile. Explain the cellular reason for hybrid sterility, and explain why a sterile hybrid is an evolutionary dead end.

  28. Distinguish between allopatric and sympatric speciation. How can two groups living in the same lake stop interbreeding without any geographical barrier?

  29. In interspecific speciation, why is the doubling of chromosomes essential before a hybrid can become a new species?

  30. Assertion: Fossils in the lower, older layers of sedimentary rock are simpler than those in the upper layers. Reason: Sediment is deposited layer upon layer over time. Explain how these two statements together provide evidence for evolution.

  31. Distinguish between a mould and a cast as types of fossils.

  32. Archaeopteryx had feathers and wings, and yet its sternum lacked a keel and its bones were solid. Explain why these two skeletal facts show that it was not a fully developed flying bird.

  33. Label the following in a diagram of the vertebrate forelimb: humerus, radius, ulna, carpals, metacarpals, phalanges. Then explain how the same bones give rise to a bat’s wing, a whale’s flipper and a human hand.

  34. The wings of a bat and the wings of a bird are analogous, and yet the bones inside them are homologous. Explain how both statements can be true at the same time.

  35. Why do analogous organs fail to establish common ancestry, whereas homologous organs succeed in doing so?

  36. If the vermiform appendix is non-functional in man, why has natural selection not eliminated it completely? What condition would have to be satisfied for an organ to be lost entirely?

  37. How does the fact that a bacterium can read a human gene and manufacture human insulin serve as molecular evidence for evolution?

  38. Why can carbon dating not be used to determine the age of a dinosaur fossil? What must be used instead?

  39. Arrange the following eras in order from oldest to most recent, and name the dominant animal group of each: Mesozoic, Archaeozoic, Cenozoic, Palaeozoic, Proterozoic, Azoic.

  40. Reptiles are described as the first true land vertebrates. What single reproductive feature justifies this description, and why could amphibians not achieve it?

  41. Ichthyosaurs were reptiles that returned to the water and became fish-like in shape. Does this contradict the statement that evolution is irreversible? Justify your answer.

  42. Why did the marsupials of Australia survive and diversify, while the South American mammals were displaced when the continents joined?

  43. Explain how erect posture, the opposable thumb, tool-making and increasing cranial capacity form a connected chain in human evolution, each step making the next one advantageous.

  44. The cranium of an elephant is larger than that of a human. On what grounds, then, is the human considered more intelligent?

  45. Arrange in the correct evolutionary sequence, and give the cranial capacity of each where it is known: Homo erectus, Dryopithecus, Homo sapiens, Australopithecus, Ramapithecus, Neanderthal man, Homo habilis.

  46. Match the following.

Column I Column II
a. Sewall Wright i. Ribozymes
b. Sidney Fox ii. Genetic drift
c. Altman and Cech iii. Microspheres
d. Sidney Fox’s contemporary, Oparin iv. Coacervates
e. Huxley v. Birds as glorified reptiles
  1. Match the fossil with the two groups it connects.
Column I Column II
a. Archaeopteryx i. Fishes and amphibia
b. Seymouria ii. Reptiles and birds
c. Ichthyostega iii. Amphibians and reptiles
  1. Define the following terms: (30–40 words)
  1. Gene pool
  2. Gene frequency
  3. Organic evolution
  4. Population
  5. Speciation
  1. What is adaptive radiation? (30–40 words)

  2. If a variation occurs in a population by chance alone and not through natural selection, and it brings about a change in the frequency of an allele — what is it called? (30–40 words)

  3. State the Hardy–Weinberg equilibrium. (30–40 words)

  4. What are homologous organs? (30–40 words)

  5. What is a vestigial organ? (30–40 words)

  6. What is the scientific name of modern man? (30–40 words)

  7. What is a coacervate? (30–40 words)

  8. Which period is known as the “age of Reptilia”? (30–40 words)

  9. Name the ancestor of humans which is described as “man with an ape brain”. (30–40 words)

  10. Write a note on genetic drift. (80–100 words)

  11. Enlist the different factors that are responsible for changing gene frequency. (80–100 words)

  12. Draw a graph to show that natural selection leads to disruptive change. (80–100 words)

  13. Give the significance of fossils. (80–100 words)

  14. Write the objections to Hugo de Vries’ mutation theory. (80–100 words)

  15. What is disruptive selection? Give an example. (80–100 words)

  16. Would you consider the wings of a butterfly and of a bat as homologous or analogous, and why? (150–200 words)

  17. What is adaptive radiation? Explain with a suitable example. (150–200 words)

  18. Taking industrial melanism as an example, explain the concept of natural selection. (150–200 words)

  19. Describe Urey and Miller’s experiment. (150–200 words)

  20. What is isolation? Describe the different types of reproductive isolation. (150–200 words)

  21. What are genetic variations? Explain the different factors responsible for genetic variations. (150–200 words)

5.18 Practice With Numericals

  1. In a large, randomly mating population in Hardy–Weinberg equilibrium, the frequency of the recessive allele a is 0.2. Calculate the frequency of the dominant allele A, and the frequencies of the AA, Aa and aa genotypes.

  2. In a population of 10,000 individuals in Hardy–Weinberg equilibrium, 400 individuals show a recessive trait. Find the frequency of the recessive allele, the frequency of the dominant allele, and the number of heterozygous individuals in the population.

  3. A recessive genetic disorder affects 1 in 2500 newborns in a large, randomly mating community. Assuming Hardy–Weinberg equilibrium, calculate the frequency of the disease allele and the percentage of the population that are healthy carriers.

  4. In a population at Hardy–Weinberg equilibrium, the frequency of heterozygous individuals (Aa) is 0.48 and the frequency of the dominant allele is greater than that of the recessive allele. Determine p and q, and hence the frequencies of AA and aa.

  5. In Urey and Miller’s experiment, methane, ammonia and hydrogen were pumped into the chamber in the proportion 1:2:2. If a total of 250 units of gas were pumped in, how many units of each gas were used?

  6. A single pair of elephants would, over a span of 750 years, produce 19,000,000 elephants if all offspring survived and reproduced. Given that elephant populations in fact remain relatively constant, express in one sentence what this comparison demonstrates about the struggle for existence — and state what fraction of the potential 19,000,000 must, on average, fail to reproduce.

  7. The cranial capacity of Australopithecus ranged from 450 to 600 cc, while that of Homo sapiens is 1450 cc. Calculate the increase in cranial capacity from the upper limit of Australopithecus to Homo sapiens, and express this increase as a percentage of the Australopithecus value.